miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 47855 1.12 0.001128
Target:  5'- gACCGAGGACGCCAUCCACAUCGCGCCg -3'
miRNA:   3'- -UGGCUCCUGCGGUAGGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 97748 0.85 0.078676
Target:  5'- cGCCGGGGACGCCcgCgGCGuucaggaucgUCGCGCCg -3'
miRNA:   3'- -UGGCUCCUGCGGuaGgUGU----------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 24085 0.8 0.162081
Target:  5'- cGCCGAGGACGUCGUgUugGUCuaGCCg -3'
miRNA:   3'- -UGGCUCCUGCGGUAgGugUAGcgCGG- -5'
25661 5' -58.1 NC_005337.1 + 43070 0.79 0.179115
Target:  5'- cACCGGcGGcGCGcCCGUCCGCAUCGCGgCg -3'
miRNA:   3'- -UGGCU-CC-UGC-GGUAGGUGUAGCGCgG- -5'
25661 5' -58.1 NC_005337.1 + 124312 0.78 0.212759
Target:  5'- aGCCGAGGAggcCGCCGUCCugAaCGCcguuGCCg -3'
miRNA:   3'- -UGGCUCCU---GCGGUAGGugUaGCG----CGG- -5'
25661 5' -58.1 NC_005337.1 + 88309 0.78 0.217986
Target:  5'- aGCuCGGGGACGUCAgcguggacgCCACG-CGCGCCg -3'
miRNA:   3'- -UG-GCUCCUGCGGUa--------GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 118777 0.78 0.223323
Target:  5'- uGCUGGcGACGCUGUCCGCAgcaGCGCCg -3'
miRNA:   3'- -UGGCUcCUGCGGUAGGUGUag-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 124300 0.77 0.234331
Target:  5'- gGCCGAGGACGCgG-CCucCGUCGCGgCg -3'
miRNA:   3'- -UGGCUCCUGCGgUaGGu-GUAGCGCgG- -5'
25661 5' -58.1 NC_005337.1 + 61889 0.77 0.242305
Target:  5'- cCCGGGGGCucgcugaccgcgacgGCCGUCCGCGcgaUCGCGCg -3'
miRNA:   3'- uGGCUCCUG---------------CGGUAGGUGU---AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 77443 0.77 0.245791
Target:  5'- aGCCGugccGGAUGCgGUcCCAUAUCGCGCUg -3'
miRNA:   3'- -UGGCu---CCUGCGgUA-GGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 122707 0.77 0.251693
Target:  5'- cCCGAGGugGUgGUCCGCGUgcugucgcaCGUGCCc -3'
miRNA:   3'- uGGCUCCugCGgUAGGUGUA---------GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 34169 0.76 0.276473
Target:  5'- -aCGGGGAUGCgCAgcUCCACGcggCGCGCCg -3'
miRNA:   3'- ugGCUCCUGCG-GU--AGGUGUa--GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 76981 0.76 0.303164
Target:  5'- uCCGAGagcGGCGCCGcagCCGCG-CGCGCCg -3'
miRNA:   3'- uGGCUC---CUGCGGUa--GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 15503 0.75 0.310139
Target:  5'- cGCCGccGGCGUCAUCUaggACGUCGCGCa -3'
miRNA:   3'- -UGGCucCUGCGGUAGG---UGUAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 115412 0.75 0.317236
Target:  5'- uCCGAGGACGCCGUCuCGC--CG-GCCg -3'
miRNA:   3'- uGGCUCCUGCGGUAG-GUGuaGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 50228 0.75 0.331794
Target:  5'- cCCGAGGGCGUCGUgCGCGccUC-CGCCg -3'
miRNA:   3'- uGGCUCCUGCGGUAgGUGU--AGcGCGG- -5'
25661 5' -58.1 NC_005337.1 + 129088 0.75 0.346837
Target:  5'- gGCCGAGGGCGCagacguaaaCUACGUCG-GCCa -3'
miRNA:   3'- -UGGCUCCUGCGgua------GGUGUAGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 118785 0.74 0.354539
Target:  5'- cGCCGgcGGcGGCGCCGUcgugCCGCG-CGCGCCg -3'
miRNA:   3'- -UGGC--UC-CUGCGGUA----GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 99146 0.74 0.362362
Target:  5'- gGCCGAGuGCGCCgcacugggcGUCCGCGcCGCGCg -3'
miRNA:   3'- -UGGCUCcUGCGG---------UAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 49854 0.74 0.362362
Target:  5'- aACCG-GGACGCCggCgGCAUCaGCaGCCg -3'
miRNA:   3'- -UGGCuCCUGCGGuaGgUGUAG-CG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.