miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 97972 0.72 0.468795
Target:  5'- uCCGuGcGCGCCAUCCGCGacaccguggccgcguUCGCGCa -3'
miRNA:   3'- uGGCuCcUGCGGUAGGUGU---------------AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 33066 0.74 0.386539
Target:  5'- aACCc-GGACGCCAUCagGCAUCGCaCCa -3'
miRNA:   3'- -UGGcuCCUGCGGUAGg-UGUAGCGcGG- -5'
25661 5' -58.1 NC_005337.1 + 132093 0.74 0.386539
Target:  5'- cGCCGccuGCGCCGUgCGCGUCGgCGCCg -3'
miRNA:   3'- -UGGCuccUGCGGUAgGUGUAGC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 49725 0.74 0.393997
Target:  5'- cGCCGguugagcGGGACGCCGgaCACggUGCGCCg -3'
miRNA:   3'- -UGGC-------UCCUGCGGUagGUGuaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 108885 0.73 0.403238
Target:  5'- uCCGAGGcCGCCA-CCGCG--GCGCCc -3'
miRNA:   3'- uGGCUCCuGCGGUaGGUGUagCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 31840 0.73 0.403238
Target:  5'- cACCGuGGACGCggagaaccacucCAUguccaCCGCGUCGCGCUc -3'
miRNA:   3'- -UGGCuCCUGCG------------GUA-----GGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 127592 0.73 0.403238
Target:  5'- aGCCGuGGACGUCG-CCGaGUCGUGCUg -3'
miRNA:   3'- -UGGCuCCUGCGGUaGGUgUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 814 0.73 0.437968
Target:  5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3'
miRNA:   3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 40822 0.72 0.459611
Target:  5'- cGCCGGcGGGCGUCuUCCGCAUgagccgcacgggacaCGCGUCg -3'
miRNA:   3'- -UGGCU-CCUGCGGuAGGUGUA---------------GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 99146 0.74 0.362362
Target:  5'- gGCCGAGuGCGCCgcacugggcGUCCGCGcCGCGCg -3'
miRNA:   3'- -UGGCUCcUGCGG---------UAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 49854 0.74 0.362362
Target:  5'- aACCG-GGACGCCggCgGCAUCaGCaGCCg -3'
miRNA:   3'- -UGGCuCCUGCGGuaGgUGUAG-CG-CGG- -5'
25661 5' -58.1 NC_005337.1 + 129088 0.75 0.346837
Target:  5'- gGCCGAGGGCGCagacguaaaCUACGUCG-GCCa -3'
miRNA:   3'- -UGGCUCCUGCGgua------GGUGUAGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 124312 0.78 0.212759
Target:  5'- aGCCGAGGAggcCGCCGUCCugAaCGCcguuGCCg -3'
miRNA:   3'- -UGGCUCCU---GCGGUAGGugUaGCG----CGG- -5'
25661 5' -58.1 NC_005337.1 + 88309 0.78 0.217986
Target:  5'- aGCuCGGGGACGUCAgcguggacgCCACG-CGCGCCg -3'
miRNA:   3'- -UG-GCUCCUGCGGUa--------GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 118777 0.78 0.223323
Target:  5'- uGCUGGcGACGCUGUCCGCAgcaGCGCCg -3'
miRNA:   3'- -UGGCUcCUGCGGUAGGUGUag-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 61889 0.77 0.242305
Target:  5'- cCCGGGGGCucgcugaccgcgacgGCCGUCCGCGcgaUCGCGCg -3'
miRNA:   3'- uGGCUCCUG---------------CGGUAGGUGU---AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 122707 0.77 0.251693
Target:  5'- cCCGAGGugGUgGUCCGCGUgcugucgcaCGUGCCc -3'
miRNA:   3'- uGGCUCCugCGgUAGGUGUA---------GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 34169 0.76 0.276473
Target:  5'- -aCGGGGAUGCgCAgcUCCACGcggCGCGCCg -3'
miRNA:   3'- ugGCUCCUGCG-GU--AGGUGUa--GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 76981 0.76 0.303164
Target:  5'- uCCGAGagcGGCGCCGcagCCGCG-CGCGCCg -3'
miRNA:   3'- uGGCUC---CUGCGGUa--GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 15503 0.75 0.310139
Target:  5'- cGCCGccGGCGUCAUCUaggACGUCGCGCa -3'
miRNA:   3'- -UGGCucCUGCGGUAGG---UGUAGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.