miRNA display CGI


Results 1 - 20 of 340 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 127844 0.66 0.796521
Target:  5'- gACCGc--ACGCCGcUCCACAUC-UGCCu -3'
miRNA:   3'- -UGGCuccUGCGGU-AGGUGUAGcGCGG- -5'
25661 5' -58.1 NC_005337.1 + 46012 0.66 0.78755
Target:  5'- uCCGcGG-CGCCcgCCGg--CGCGCCg -3'
miRNA:   3'- uGGCuCCuGCGGuaGGUguaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 93279 0.66 0.805347
Target:  5'- gGCCGGGGguGCGUCGgcgCCugGUgGCGgUCg -3'
miRNA:   3'- -UGGCUCC--UGCGGUa--GGugUAgCGC-GG- -5'
25661 5' -58.1 NC_005337.1 + 21107 0.66 0.796521
Target:  5'- -aCG-GGACGCCGgccgCCACGcaGCGCa -3'
miRNA:   3'- ugGCuCCUGCGGUa---GGUGUagCGCGg -5'
25661 5' -58.1 NC_005337.1 + 93050 0.66 0.805347
Target:  5'- aACUGGGcuuCGCCgagGUCCGCGggcuaaGCGCCg -3'
miRNA:   3'- -UGGCUCcu-GCGG---UAGGUGUag----CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 36127 0.66 0.805347
Target:  5'- gUCGGGGAagGCCG-CCACGgaccCGcCGCCg -3'
miRNA:   3'- uGGCUCCUg-CGGUaGGUGUa---GC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 68347 0.66 0.78755
Target:  5'- uGCCgGAGGACGgCGcggUCGCgAUCGCGUg -3'
miRNA:   3'- -UGG-CUCCUGCgGUa--GGUG-UAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 74806 0.66 0.796521
Target:  5'- cACCGGGGaccuGCGCCucUCCagcGCGgagguggaGCGCCa -3'
miRNA:   3'- -UGGCUCC----UGCGGu-AGG---UGUag------CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 133277 0.66 0.805347
Target:  5'- uCCaGGcGACGCCcgcccuccgCCGCGcCGCGCCa -3'
miRNA:   3'- uGGcUC-CUGCGGua-------GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 25631 0.66 0.796521
Target:  5'- uCCGcgcGGuCGCCcgCCACGgcCGCGUCg -3'
miRNA:   3'- uGGCu--CCuGCGGuaGGUGUa-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 115962 0.66 0.834164
Target:  5'- gGCCauGGACGCgCuguUCCgcugccuguucgugcACAUCGCGCUg -3'
miRNA:   3'- -UGGcuCCUGCG-Gu--AGG---------------UGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 30647 0.66 0.796521
Target:  5'- -gCGAGGGagGCUG-CCGCGUCGCggGCCu -3'
miRNA:   3'- ugGCUCCUg-CGGUaGGUGUAGCG--CGG- -5'
25661 5' -58.1 NC_005337.1 + 96951 0.66 0.796521
Target:  5'- -aCGAGG-UGCUcgCCGCG-CGCGaCCa -3'
miRNA:   3'- ugGCUCCuGCGGuaGGUGUaGCGC-GG- -5'
25661 5' -58.1 NC_005337.1 + 33931 0.66 0.805347
Target:  5'- cCCGA--GCGCC-UUCACGUC-CGCCa -3'
miRNA:   3'- uGGCUccUGCGGuAGGUGUAGcGCGG- -5'
25661 5' -58.1 NC_005337.1 + 54575 0.66 0.78755
Target:  5'- cACUGGGGcaagACGCgCAUCUacgagucguACAUCGUGCg -3'
miRNA:   3'- -UGGCUCC----UGCG-GUAGG---------UGUAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 28238 0.66 0.805347
Target:  5'- cACCGAa-ACGCCGUCgCGCGgcaccaCGCGCa -3'
miRNA:   3'- -UGGCUccUGCGGUAG-GUGUa-----GCGCGg -5'
25661 5' -58.1 NC_005337.1 + 121331 0.66 0.791155
Target:  5'- gUCGAGGACGUCcgCCgguaccuggaguucgGCggCGaCGCCa -3'
miRNA:   3'- uGGCUCCUGCGGuaGG---------------UGuaGC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 18247 0.66 0.78755
Target:  5'- cGCgCGAGGACGgucaCGUCCACcugcUCGgugaGCCg -3'
miRNA:   3'- -UG-GCUCCUGCg---GUAGGUGu---AGCg---CGG- -5'
25661 5' -58.1 NC_005337.1 + 47749 0.66 0.78755
Target:  5'- uACUGggagaAGGGCGCCcgCCGCGccaaCGCGUa -3'
miRNA:   3'- -UGGC-----UCCUGCGGuaGGUGUa---GCGCGg -5'
25661 5' -58.1 NC_005337.1 + 16766 0.66 0.78755
Target:  5'- cGCCGGcuGAUGUCGUgCACcgCGuCGCCg -3'
miRNA:   3'- -UGGCUc-CUGCGGUAgGUGuaGC-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.