Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 3' | -52.7 | NC_005337.1 | + | 103126 | 0.71 | 0.785688 |
Target: 5'- gCGGCAUCGUGc---GCGCGCUCuacagcgUCCAg -3' miRNA: 3'- -GUUGUAGCACuuguCGCGCGAG-------AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 19561 | 0.71 | 0.786639 |
Target: 5'- gGACGUCGUaaacggcgguGAGCcGCGCGaggaUCUCCAc -3' miRNA: 3'- gUUGUAGCA----------CUUGuCGCGCg---AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 58556 | 0.71 | 0.786639 |
Target: 5'- gCAGCGggaUGUGGuacACGGCGaUGCUCUCCGg -3' miRNA: 3'- -GUUGUa--GCACU---UGUCGC-GCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 131402 | 0.7 | 0.82338 |
Target: 5'- cCGugAUCGUGuucccGCuGGCGCGCggCUCCGc -3' miRNA: 3'- -GUugUAGCACu----UG-UCGCGCGa-GAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 103357 | 0.7 | 0.840665 |
Target: 5'- gGugGUCGaGAACGGCGUGCUCg--- -3' miRNA: 3'- gUugUAGCaCUUGUCGCGCGAGaggu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 2564 | 0.69 | 0.865046 |
Target: 5'- ---aGUCGU--ACAGCGCGgaCUCCAu -3' miRNA: 3'- guugUAGCAcuUGUCGCGCgaGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 89245 | 0.69 | 0.872731 |
Target: 5'- gAGCAUCGUGcGGCAGUccaCGCUCcCCAc -3' miRNA: 3'- gUUGUAGCAC-UUGUCGc--GCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 100721 | 0.69 | 0.872731 |
Target: 5'- -cACGUaCGUGAaguacACGGCucugguguccGCGCUCUCCGc -3' miRNA: 3'- guUGUA-GCACU-----UGUCG----------CGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 30737 | 0.69 | 0.880184 |
Target: 5'- ---aGUCGU--ACAGCGCGCgCUCCu -3' miRNA: 3'- guugUAGCAcuUGUCGCGCGaGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 63415 | 0.69 | 0.880184 |
Target: 5'- uGGCGcgcUCGU--ACAGCGCGCgguUCUCCGc -3' miRNA: 3'- gUUGU---AGCAcuUGUCGCGCG---AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 123081 | 0.69 | 0.880184 |
Target: 5'- gCGAUAUCGUGAACca---GCUCUCCGc -3' miRNA: 3'- -GUUGUAGCACUUGucgcgCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 66766 | 0.69 | 0.8874 |
Target: 5'- -cGCAcgCGcGGGCcgcugGGCGUGCUCUCCAa -3' miRNA: 3'- guUGUa-GCaCUUG-----UCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 11358 | 0.69 | 0.8874 |
Target: 5'- uCAGCAUCGcGcccuCgAGCGCGCUCgCCAu -3' miRNA: 3'- -GUUGUAGCaCuu--G-UCGCGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 100661 | 0.69 | 0.8874 |
Target: 5'- -cACAUCGUGAACcacGcCGCGUUCgcgCCGc -3' miRNA: 3'- guUGUAGCACUUGu--C-GCGCGAGa--GGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 6285 | 0.69 | 0.892307 |
Target: 5'- gCAGCGUCGUGucggcguuGCAGCGCaccucgcgcauggcGCggaUCUCCGc -3' miRNA: 3'- -GUUGUAGCACu-------UGUCGCG--------------CG---AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 110255 | 0.69 | 0.894373 |
Target: 5'- gAGCcgCGUGAGCauguguaugAGCGCGgUCUCg- -3' miRNA: 3'- gUUGuaGCACUUG---------UCGCGCgAGAGgu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 31879 | 0.69 | 0.894373 |
Target: 5'- -----cCGUGGGCAcggucuuCGCGCUCUCCAc -3' miRNA: 3'- guuguaGCACUUGUc------GCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 80829 | 0.69 | 0.894373 |
Target: 5'- gAugGUCuUGAG-GGCGUGCUCUCCu -3' miRNA: 3'- gUugUAGcACUUgUCGCGCGAGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 3291 | 0.68 | 0.9011 |
Target: 5'- gCGGCGUCGUGucgUAGCGCGCguugCgcacgUCCAc -3' miRNA: 3'- -GUUGUAGCACuu-GUCGCGCGa---G-----AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 2923 | 0.68 | 0.907576 |
Target: 5'- gCGGCGUCGccgGAgugccgacgcgcACGGCGCGCaugagcgcggUCUCCGc -3' miRNA: 3'- -GUUGUAGCa--CU------------UGUCGCGCG----------AGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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