miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 133454 0.76 0.411131
Target:  5'- cCCGggcccgCGCGCGCGgacGGCUCCgcGGAGCUg -3'
miRNA:   3'- -GGCaa----GUGCGCGC---UCGAGGa-CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 133454 0.76 0.411131
Target:  5'- cCCGggcccgCGCGCGCGgacGGCUCCgcGGAGCUg -3'
miRNA:   3'- -GGCaa----GUGCGCGC---UCGAGGa-CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 133373 0.72 0.614996
Target:  5'- gCCGcgcucgUCGCGCuCGGGCUCCUGcucGGCg -3'
miRNA:   3'- -GGCa-----AGUGCGcGCUCGAGGACu--UCGa -5'
25675 3' -55.4 NC_005337.1 + 133373 0.72 0.614996
Target:  5'- gCCGcgcucgUCGCGCuCGGGCUCCUGcucGGCg -3'
miRNA:   3'- -GGCa-----AGUGCGcGCUCGAGGACu--UCGa -5'
25675 3' -55.4 NC_005337.1 + 132040 0.67 0.869434
Target:  5'- gCGUUCcuCGCGCG-GUUCCUGcgcGCg -3'
miRNA:   3'- gGCAAGu-GCGCGCuCGAGGACuu-CGa -5'
25675 3' -55.4 NC_005337.1 + 130710 0.68 0.829568
Target:  5'- cCCGUcCGCGUGCgugGAGCUCgUcGAGCg -3'
miRNA:   3'- -GGCAaGUGCGCG---CUCGAGgAcUUCGa -5'
25675 3' -55.4 NC_005337.1 + 130177 0.71 0.656256
Target:  5'- gCCGUgCGCGCG-GAGCacgcggagcucaUCCUGGAGUg -3'
miRNA:   3'- -GGCAaGUGCGCgCUCG------------AGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 129584 0.71 0.666543
Target:  5'- gCCGUgcugcucaagUC-CGCGCGAGCgaCCgUGGAGCUc -3'
miRNA:   3'- -GGCA----------AGuGCGCGCUCGa-GG-ACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 128691 0.66 0.91606
Target:  5'- gCCGggCACGCGCGcuGGCgacgcggCUGgcGCg -3'
miRNA:   3'- -GGCaaGUGCGCGC--UCGag-----GACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 126208 0.68 0.803401
Target:  5'- aCGgacgcCACGCGCGAGUgcgugaUGGAGCUg -3'
miRNA:   3'- gGCaa---GUGCGCGCUCGagg---ACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 124619 0.71 0.64595
Target:  5'- aCCGagcUCACGCGCGGGCUgCUc-AGCa -3'
miRNA:   3'- -GGCa--AGUGCGCGCUCGAgGAcuUCGa -5'
25675 3' -55.4 NC_005337.1 + 124400 0.67 0.876782
Target:  5'- gCGUUCAacggucUGCGCGAGauggUCCUG-GGCa -3'
miRNA:   3'- gGCAAGU------GCGCGCUCg---AGGACuUCGa -5'
25675 3' -55.4 NC_005337.1 + 122287 0.66 0.890808
Target:  5'- aCCGgg-ACGCGgagGAGCUCCgcGAGGCg -3'
miRNA:   3'- -GGCaagUGCGCg--CUCGAGGa-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 121981 0.72 0.604694
Target:  5'- gCGgacaUCGUGCGCGAGCUCCUGcgcGCg -3'
miRNA:   3'- gGCa---AGUGCGCGCUCGAGGACuu-CGa -5'
25675 3' -55.4 NC_005337.1 + 116111 0.66 0.91606
Target:  5'- -aGUUCGuCGaGCagGAGCUCgUGGAGCUg -3'
miRNA:   3'- ggCAAGU-GCgCG--CUCGAGgACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 116065 0.7 0.717373
Target:  5'- gCGUUCACG-GaCGGGCUCUgcacGGAGCg -3'
miRNA:   3'- gGCAAGUGCgC-GCUCGAGGa---CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 112327 0.7 0.747056
Target:  5'- -aGUUCACGCcgaugaccuccGCGAGCUCggcGGAGCg -3'
miRNA:   3'- ggCAAGUGCG-----------CGCUCGAGga-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 109463 0.66 0.910105
Target:  5'- aCCGUgugcgugCGCGCGUGGGCgcgcuUCCgGAucucGGCg -3'
miRNA:   3'- -GGCAa------GUGCGCGCUCG-----AGGaCU----UCGa -5'
25675 3' -55.4 NC_005337.1 + 108747 0.69 0.785154
Target:  5'- cUCGcg-GCGCGUGGGCcgcugCCUGGAGCg -3'
miRNA:   3'- -GGCaagUGCGCGCUCGa----GGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 106590 0.66 0.897476
Target:  5'- gCGUggACGCGCGA---CCUGggGCc -3'
miRNA:   3'- gGCAagUGCGCGCUcgaGGACuuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.