miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 4501 0.71 0.391808
Target:  5'- aCGUGCAGCgGCGUGUucccgaacacguugGUGGUCaUGGGGu -3'
miRNA:   3'- -GCGCGUCG-CGCGCG--------------CACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 109474 0.71 0.402451
Target:  5'- gCGCGCGuGgGCGCGCuuccgGAUCUCGGcGa -3'
miRNA:   3'- -GCGCGU-CgCGCGCGca---CUAGAGCC-Cc -5'
25687 5' -60.9 NC_005337.1 + 128321 0.71 0.410762
Target:  5'- gCGCGCGGCGCGaGCGcGAcugCUCGGu- -3'
miRNA:   3'- -GCGCGUCGCGCgCGCaCUa--GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 25113 0.71 0.419179
Target:  5'- gGCGCGGCGCGCGCGgacgcgUGAauaUUCGGc- -3'
miRNA:   3'- gCGCGUCGCGCGCGC------ACUa--GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 122377 0.71 0.419179
Target:  5'- aCGCGCAuguGCGUGCGCGaGGUCgugcugcgCGGcGGc -3'
miRNA:   3'- -GCGCGU---CGCGCGCGCaCUAGa-------GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 40539 0.71 0.419179
Target:  5'- cCGcCGCGGCGCGCG-GUGGugcgguUCUCGaGGa -3'
miRNA:   3'- -GC-GCGUCGCGCGCgCACU------AGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 102947 0.71 0.419179
Target:  5'- gGUGCAGUGCGagaacacCGUGGUCgUGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgc-----GCACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 74379 0.71 0.4277
Target:  5'- gGCGCAGCuGCGCGagaCGUacAUCUCcGGGGc -3'
miRNA:   3'- gCGCGUCG-CGCGC---GCAc-UAGAG-CCCC- -5'
25687 5' -60.9 NC_005337.1 + 73411 0.71 0.4277
Target:  5'- -cCGCAGCuCGUGgaCGUGGUgCUCGGGGa -3'
miRNA:   3'- gcGCGUCGcGCGC--GCACUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 84564 0.71 0.4277
Target:  5'- aCGCGCGGCa-GCGCGUGAcCgCGaGGGu -3'
miRNA:   3'- -GCGCGUCGcgCGCGCACUaGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 9658 0.7 0.436321
Target:  5'- --aGCAGCcCGCGCGUGAgCUCGGu- -3'
miRNA:   3'- gcgCGUCGcGCGCGCACUaGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 29218 0.7 0.436321
Target:  5'- uGCGCAGCGcCGCGCGg---C-CGGGc -3'
miRNA:   3'- gCGCGUCGC-GCGCGCacuaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 46460 0.7 0.445043
Target:  5'- gCGCGCGGCGCGCcgGCGaGcUCcCGGGc -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCaCuAGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 89959 0.7 0.445043
Target:  5'- gGCGCGGC-CGCaGCacGcgCUCGGGGg -3'
miRNA:   3'- gCGCGUCGcGCG-CGcaCuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 119777 0.7 0.462773
Target:  5'- aCGCauGUGGC-CGCGCGUGGUCggugCGGuGGu -3'
miRNA:   3'- -GCG--CGUCGcGCGCGCACUAGa---GCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 12585 0.7 0.466364
Target:  5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3'
miRNA:   3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 109532 0.7 0.468164
Target:  5'- cCGCGCGGCGCgauggcgguguaggGCGCGUacccgcgGAacUCcgCGGGGu -3'
miRNA:   3'- -GCGCGUCGCG--------------CGCGCA-------CU--AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 126435 0.7 0.469066
Target:  5'- gGCGC-GCGUGCGCGUGuaccaccgcgcgcuGUCgCGGaGGa -3'
miRNA:   3'- gCGCGuCGCGCGCGCAC--------------UAGaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 56130 0.7 0.471776
Target:  5'- uCGC-CAGCGUGCGCG-GcgUgcagCGGGGc -3'
miRNA:   3'- -GCGcGUCGCGCGCGCaCuaGa---GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 28495 0.7 0.480867
Target:  5'- cCGCGCGGCGCGCG-GUcGcgCggcacugcgUGGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCgCA-CuaGa--------GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.