miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 3' -54.6 NC_005337.1 + 28915 1.12 0.002609
Target:  5'- cGAGGUGACCAAGCACGCGAUCGACGGg -3'
miRNA:   3'- -CUCCACUGGUUCGUGCGCUAGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 6477 0.8 0.269225
Target:  5'- -cGGUGACC-AGCGCGCGGacgaggaggucgaUCGGCGGc -3'
miRNA:   3'- cuCCACUGGuUCGUGCGCU-------------AGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 98126 0.8 0.289728
Target:  5'- --cGUGACCAGGCAcCGCGG-CGGCGGg -3'
miRNA:   3'- cucCACUGGUUCGU-GCGCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 31912 0.8 0.289728
Target:  5'- -cGGUGGCCAGGUGCGCGGccUCGGgGGc -3'
miRNA:   3'- cuCCACUGGUUCGUGCGCU--AGCUgCC- -5'
25695 3' -54.6 NC_005337.1 + 39275 0.79 0.332842
Target:  5'- -cGGUGGCCGcGCugGCGG-CGGCGGu -3'
miRNA:   3'- cuCCACUGGUuCGugCGCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 100037 0.78 0.380482
Target:  5'- gGAGGUgcucgacggGACCGuGCGCGUGGUCGACGu -3'
miRNA:   3'- -CUCCA---------CUGGUuCGUGCGCUAGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 23252 0.77 0.405952
Target:  5'- -cGGUGACCAAGCGCaaGAUCGAgCGc -3'
miRNA:   3'- cuCCACUGGUUCGUGcgCUAGCU-GCc -5'
25695 3' -54.6 NC_005337.1 + 118511 0.76 0.478806
Target:  5'- cGGGUGACC-GGCGuCGUG-UCGGCGGa -3'
miRNA:   3'- cUCCACUGGuUCGU-GCGCuAGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 4028 0.74 0.534414
Target:  5'- -cGGUGugCAGGUACGCGugcagcggcgucuuGUCGAgCGGg -3'
miRNA:   3'- cuCCACugGUUCGUGCGC--------------UAGCU-GCC- -5'
25695 3' -54.6 NC_005337.1 + 982 0.73 0.59829
Target:  5'- cGGGGcUGGCgcGGCGCGCGGagGGCGGg -3'
miRNA:   3'- -CUCC-ACUGguUCGUGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 982 0.73 0.59829
Target:  5'- cGGGGcUGGCgcGGCGCGCGGagGGCGGg -3'
miRNA:   3'- -CUCC-ACUGguUCGUGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 87281 0.73 0.618858
Target:  5'- gGAGGUGuuCGugcGGUGCGCGAUCGGCu- -3'
miRNA:   3'- -CUCCACugGU---UCGUGCGCUAGCUGcc -5'
25695 3' -54.6 NC_005337.1 + 68137 0.73 0.628131
Target:  5'- -cGGUGGCCGcGCGCGCcccuagcGggCGGCGGa -3'
miRNA:   3'- cuCCACUGGUuCGUGCG-------CuaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 124261 0.72 0.649768
Target:  5'- -cGG-GAUCGAGCACGaCGA-CGGCGGc -3'
miRNA:   3'- cuCCaCUGGUUCGUGC-GCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 47941 0.72 0.649768
Target:  5'- gGAGGaGGCCGGccugacGCugGCGAcCGACGGc -3'
miRNA:   3'- -CUCCaCUGGUU------CGugCGCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 55096 0.72 0.670317
Target:  5'- cAGGUGAUCcAGCGCGCGAUgaucgaguaCGACa- -3'
miRNA:   3'- cUCCACUGGuUCGUGCGCUA---------GCUGcc -5'
25695 3' -54.6 NC_005337.1 + 85125 0.72 0.690739
Target:  5'- aAGGUGuCCAGGUACGUGGUCcagugcaccACGGg -3'
miRNA:   3'- cUCCACuGGUUCGUGCGCUAGc--------UGCC- -5'
25695 3' -54.6 NC_005337.1 + 108835 0.72 0.690739
Target:  5'- -cGGUG-CCgAAGCGCGCGggCGACa- -3'
miRNA:   3'- cuCCACuGG-UUCGUGCGCuaGCUGcc -5'
25695 3' -54.6 NC_005337.1 + 66934 0.71 0.696831
Target:  5'- -uGGUGGCCAcggacccggacgcGCGCGCGAUCGAgCGc -3'
miRNA:   3'- cuCCACUGGUu------------CGUGCGCUAGCU-GCc -5'
25695 3' -54.6 NC_005337.1 + 48352 0.71 0.700881
Target:  5'- -cGGUGaACCAGGC-CGCGGUgGugGa -3'
miRNA:   3'- cuCCAC-UGGUUCGuGCGCUAgCugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.