miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 3' -54.6 NC_005337.1 + 900 0.71 0.740768
Target:  5'- cAGGaGcCCGAGCGCGaCGAgcgCGGCGGc -3'
miRNA:   3'- cUCCaCuGGUUCGUGC-GCUa--GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 900 0.71 0.740768
Target:  5'- cAGGaGcCCGAGCGCGaCGAgcgCGGCGGc -3'
miRNA:   3'- cUCCaCuGGUUCGUGC-GCUa--GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 935 0.69 0.832462
Target:  5'- cGAGGcGGCgGAGCGCggacaugcugGCGG-CGGCGGg -3'
miRNA:   3'- -CUCCaCUGgUUCGUG----------CGCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 935 0.69 0.832462
Target:  5'- cGAGGcGGCgGAGCGCggacaugcugGCGG-CGGCGGg -3'
miRNA:   3'- -CUCCaCUGgUUCGUG----------CGCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 982 0.73 0.59829
Target:  5'- cGGGGcUGGCgcGGCGCGCGGagGGCGGg -3'
miRNA:   3'- -CUCC-ACUGguUCGUGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 982 0.73 0.59829
Target:  5'- cGGGGcUGGCgcGGCGCGCGGagGGCGGg -3'
miRNA:   3'- -CUCC-ACUGguUCGUGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 3126 0.67 0.893048
Target:  5'- -cGGccGGCCucgcguccAGCGCGCGGUCGAUGc -3'
miRNA:   3'- cuCCa-CUGGu-------UCGUGCGCUAGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 4028 0.74 0.534414
Target:  5'- -cGGUGugCAGGUACGCGugcagcggcgucuuGUCGAgCGGg -3'
miRNA:   3'- cuCCACugGUUCGUGCGC--------------UAGCU-GCC- -5'
25695 3' -54.6 NC_005337.1 + 5432 0.68 0.871191
Target:  5'- -uGGUcaGGCagagGAGCACGCGGUCGAgcaucucCGGg -3'
miRNA:   3'- cuCCA--CUGg---UUCGUGCGCUAGCU-------GCC- -5'
25695 3' -54.6 NC_005337.1 + 6477 0.8 0.269225
Target:  5'- -cGGUGACC-AGCGCGCGGacgaggaggucgaUCGGCGGc -3'
miRNA:   3'- cuCCACUGGuUCGUGCGCU-------------AGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 7039 0.71 0.750523
Target:  5'- ----aGGCCGAGCACGuCGGggcgggCGGCGGg -3'
miRNA:   3'- cuccaCUGGUUCGUGC-GCUa-----GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 9186 0.7 0.788393
Target:  5'- cAGGUG-CUuGGcCACGCGGUCG-CGGa -3'
miRNA:   3'- cUCCACuGGuUC-GUGCGCUAGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 9395 0.68 0.871191
Target:  5'- cGAGGUccucggaGGCCGuaggcGGCAUGCGAUCcACGa -3'
miRNA:   3'- -CUCCA-------CUGGU-----UCGUGCGCUAGcUGCc -5'
25695 3' -54.6 NC_005337.1 + 11934 0.67 0.912084
Target:  5'- -cGGcacCCGGGCGCGCGccGUCGAgGGa -3'
miRNA:   3'- cuCCacuGGUUCGUGCGC--UAGCUgCC- -5'
25695 3' -54.6 NC_005337.1 + 12226 0.69 0.832462
Target:  5'- aAGGUGGCCAGGC-UGUGcagCGGCGu -3'
miRNA:   3'- cUCCACUGGUUCGuGCGCua-GCUGCc -5'
25695 3' -54.6 NC_005337.1 + 13693 0.66 0.928963
Target:  5'- cGAGGcaGACUAGGUGCGCGGUgGAg-- -3'
miRNA:   3'- -CUCCa-CUGGUUCGUGCGCUAgCUgcc -5'
25695 3' -54.6 NC_005337.1 + 15466 0.69 0.823985
Target:  5'- -uGGcUGGCCAccgacGGCGCGCGcggcaCGACGGc -3'
miRNA:   3'- cuCC-ACUGGU-----UCGUGCGCua---GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 15833 0.68 0.886235
Target:  5'- aGAGGUcGGCUucGCACGgCGAgcgcgggcUUGGCGGc -3'
miRNA:   3'- -CUCCA-CUGGuuCGUGC-GCU--------AGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 18340 0.66 0.948085
Target:  5'- -uGGUGGuCCGAGCACGgGccCGugGc -3'
miRNA:   3'- cuCCACU-GGUUCGUGCgCuaGCugCc -5'
25695 3' -54.6 NC_005337.1 + 21712 0.67 0.899629
Target:  5'- -uGGUGACCAAGgACGUGcUCGcCa- -3'
miRNA:   3'- cuCCACUGGUUCgUGCGCuAGCuGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.