miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25695 3' -54.6 NC_005337.1 + 61892 0.69 0.80651
Target:  5'- gGGGGcucgcUGACCGcgacGGCcguccGCGCGAUCGcGCGGa -3'
miRNA:   3'- -CUCC-----ACUGGU----UCG-----UGCGCUAGC-UGCC- -5'
25695 3' -54.6 NC_005337.1 + 126401 0.71 0.724964
Target:  5'- -cGGUGAUCAcggccaaggccgcccGGCGCGCGA-CGGCGc -3'
miRNA:   3'- cuCCACUGGU---------------UCGUGCGCUaGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 36092 0.71 0.729927
Target:  5'- -uGGUGcACCAcgccgacgauggaGGuCACGCGGUCGuCGGg -3'
miRNA:   3'- cuCCAC-UGGU-------------UC-GUGCGCUAGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 38475 0.71 0.740768
Target:  5'- -cGGUGcgcGCCGGGCGCGCGcGUCGcCGa -3'
miRNA:   3'- cuCCAC---UGGUUCGUGCGC-UAGCuGCc -5'
25695 3' -54.6 NC_005337.1 + 900 0.71 0.740768
Target:  5'- cAGGaGcCCGAGCGCGaCGAgcgCGGCGGc -3'
miRNA:   3'- cUCCaCuGGUUCGUGC-GCUa--GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 7039 0.71 0.750523
Target:  5'- ----aGGCCGAGCACGuCGGggcgggCGGCGGg -3'
miRNA:   3'- cuccaCUGGUUCGUGC-GCUa-----GCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 21923 0.7 0.769707
Target:  5'- gGAGGUGGCCGcgcgcuccgccgAGCuCGCGGagucaUCGGCGu -3'
miRNA:   3'- -CUCCACUGGU------------UCGuGCGCU-----AGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 120780 0.7 0.769707
Target:  5'- cGGGUGACCGggaugcagcuggAGCgGCGCGA--GACGGu -3'
miRNA:   3'- cUCCACUGGU------------UCG-UGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 9186 0.7 0.788393
Target:  5'- cAGGUG-CUuGGcCACGCGGUCG-CGGa -3'
miRNA:   3'- cUCCACuGGuUC-GUGCGCUAGCuGCC- -5'
25695 3' -54.6 NC_005337.1 + 40522 0.71 0.710964
Target:  5'- cGAGGUGcggcaugcagccGCCGcGGCGCGCGGUgGuGCGGu -3'
miRNA:   3'- -CUCCAC------------UGGU-UCGUGCGCUAgC-UGCC- -5'
25695 3' -54.6 NC_005337.1 + 28486 0.71 0.710964
Target:  5'- -cGGaugcGGCCGcgcGGCGCGCGGUCGcGCGGc -3'
miRNA:   3'- cuCCa---CUGGU---UCGUGCGCUAGC-UGCC- -5'
25695 3' -54.6 NC_005337.1 + 48352 0.71 0.700881
Target:  5'- -cGGUGaACCAGGC-CGCGGUgGugGa -3'
miRNA:   3'- cuCCAC-UGGUUCGuGCGCUAgCugCc -5'
25695 3' -54.6 NC_005337.1 + 100037 0.78 0.380482
Target:  5'- gGAGGUgcucgacggGACCGuGCGCGUGGUCGACGu -3'
miRNA:   3'- -CUCCA---------CUGGUuCGUGCGCUAGCUGCc -5'
25695 3' -54.6 NC_005337.1 + 4028 0.74 0.534414
Target:  5'- -cGGUGugCAGGUACGCGugcagcggcgucuuGUCGAgCGGg -3'
miRNA:   3'- cuCCACugGUUCGUGCGC--------------UAGCU-GCC- -5'
25695 3' -54.6 NC_005337.1 + 982 0.73 0.59829
Target:  5'- cGGGGcUGGCgcGGCGCGCGGagGGCGGg -3'
miRNA:   3'- -CUCC-ACUGguUCGUGCGCUagCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 68137 0.73 0.628131
Target:  5'- -cGGUGGCCGcGCGCGCcccuagcGggCGGCGGa -3'
miRNA:   3'- cuCCACUGGUuCGUGCG-------CuaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 124261 0.72 0.649768
Target:  5'- -cGG-GAUCGAGCACGaCGA-CGGCGGc -3'
miRNA:   3'- cuCCaCUGGUUCGUGC-GCUaGCUGCC- -5'
25695 3' -54.6 NC_005337.1 + 55096 0.72 0.670317
Target:  5'- cAGGUGAUCcAGCGCGCGAUgaucgaguaCGACa- -3'
miRNA:   3'- cUCCACUGGuUCGUGCGCUA---------GCUGcc -5'
25695 3' -54.6 NC_005337.1 + 108835 0.72 0.690739
Target:  5'- -cGGUG-CCgAAGCGCGCGggCGACa- -3'
miRNA:   3'- cuCCACuGG-UUCGUGCGCuaGCUGcc -5'
25695 3' -54.6 NC_005337.1 + 66934 0.71 0.696831
Target:  5'- -uGGUGGCCAcggacccggacgcGCGCGCGAUCGAgCGc -3'
miRNA:   3'- cuCCACUGGUu------------CGUGCGCUAGCU-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.