miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 5' -55.8 NC_005337.1 + 24318 1.09 0.002441
Target:  5'- cAGCACCACCUGCGUGAACGAGGAGUGg -3'
miRNA:   3'- -UCGUGGUGGACGCACUUGCUCCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 100508 0.76 0.363586
Target:  5'- cAGCAUguaCUGCGUGGACGAGGAGcUGc -3'
miRNA:   3'- -UCGUGgugGACGCACUUGCUCCUC-AC- -5'
25701 5' -55.8 NC_005337.1 + 124240 0.74 0.469537
Target:  5'- gGGCGgCGCCUGCGUGGAggucccCGAGGAc-- -3'
miRNA:   3'- -UCGUgGUGGACGCACUU------GCUCCUcac -5'
25701 5' -55.8 NC_005337.1 + 28595 0.72 0.548217
Target:  5'- cAGCGCCACC-GCGUcugGAcgcACGAGGAcaGUGa -3'
miRNA:   3'- -UCGUGGUGGaCGCA---CU---UGCUCCU--CAC- -5'
25701 5' -55.8 NC_005337.1 + 68619 0.72 0.555321
Target:  5'- gGGCACCACCUcgaacuccagcgugGCGgagGGGCGGaucuuGGGGUGg -3'
miRNA:   3'- -UCGUGGUGGA--------------CGCa--CUUGCU-----CCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 55795 0.72 0.558374
Target:  5'- gAGCGCgACCUGaCGcUGGACGAGGuGcUGa -3'
miRNA:   3'- -UCGUGgUGGAC-GC-ACUUGCUCCuC-AC- -5'
25701 5' -55.8 NC_005337.1 + 109986 0.72 0.589132
Target:  5'- gAGCACCAcgcCCUGCGUGAGCGccGGccagcugacGUGg -3'
miRNA:   3'- -UCGUGGU---GGACGCACUUGCucCU---------CAC- -5'
25701 5' -55.8 NC_005337.1 + 92723 0.7 0.651307
Target:  5'- aAGCGCgugCGCCUGC-UGGAgGAGGAGg- -3'
miRNA:   3'- -UCGUG---GUGGACGcACUUgCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 68246 0.7 0.651307
Target:  5'- gAGCGCgGCCggcGCGUGGGCGAGcgucGAGg- -3'
miRNA:   3'- -UCGUGgUGGa--CGCACUUGCUC----CUCac -5'
25701 5' -55.8 NC_005337.1 + 86246 0.7 0.652344
Target:  5'- gGGCACCGUCgcguugcgcacgaagGcCGUGAACGAGGAGg- -3'
miRNA:   3'- -UCGUGGUGGa--------------C-GCACUUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 67663 0.7 0.661663
Target:  5'- cAGCACCACCgaGUGcUGGuugccguaguACGAGGGGUu -3'
miRNA:   3'- -UCGUGGUGGa-CGC-ACU----------UGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 90263 0.7 0.671995
Target:  5'- gAGCACCACC-GCG-GAGCu-GGAGUu -3'
miRNA:   3'- -UCGUGGUGGaCGCaCUUGcuCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 14796 0.7 0.682293
Target:  5'- gGGCGCgGuguuguucuCgUGCGUGAGCGAGGAcgccGUGg -3'
miRNA:   3'- -UCGUGgU---------GgACGCACUUGCUCCU----CAC- -5'
25701 5' -55.8 NC_005337.1 + 126449 0.7 0.702753
Target:  5'- uGUACCACCgcgcgcugucGCGgagGAugGAGGaAGUGa -3'
miRNA:   3'- uCGUGGUGGa---------CGCa--CUugCUCC-UCAC- -5'
25701 5' -55.8 NC_005337.1 + 99390 0.7 0.702753
Target:  5'- cGGCACCACCUGCcgGUGcugcgcaccgcgGGCGGcGGGUGc -3'
miRNA:   3'- -UCGUGGUGGACG--CAC------------UUGCUcCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 34374 0.69 0.712896
Target:  5'- gAGCGCCGCCgcgGCGagccagagGAGCGuGGcGGUGc -3'
miRNA:   3'- -UCGUGGUGGa--CGCa-------CUUGCuCC-UCAC- -5'
25701 5' -55.8 NC_005337.1 + 133744 0.69 0.722968
Target:  5'- uGGCGCCggcagcuggagcGCCUGCGcc-GCGAGGAGc- -3'
miRNA:   3'- -UCGUGG------------UGGACGCacuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 97920 0.69 0.722968
Target:  5'- gGGcCGCCGCCcguggGCGUGAugGcGGuGUGu -3'
miRNA:   3'- -UC-GUGGUGGa----CGCACUugCuCCuCAC- -5'
25701 5' -55.8 NC_005337.1 + 111229 0.69 0.722968
Target:  5'- cGCGCgGCgUGCGUcacGAACGAGGAc-- -3'
miRNA:   3'- uCGUGgUGgACGCA---CUUGCUCCUcac -5'
25701 5' -55.8 NC_005337.1 + 133744 0.69 0.722968
Target:  5'- uGGCGCCggcagcuggagcGCCUGCGcc-GCGAGGAGc- -3'
miRNA:   3'- -UCGUGG------------UGGACGCacuUGCUCCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.