miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 5' -55.8 NC_005337.1 + 10309 0.67 0.834845
Target:  5'- -aCACCauGCCUGUGUucauGACGAuGGAGUGg -3'
miRNA:   3'- ucGUGG--UGGACGCAc---UUGCU-CCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 10886 0.69 0.752664
Target:  5'- gAGCACCACgUGUGcggGGACGGGGuacAGg- -3'
miRNA:   3'- -UCGUGGUGgACGCa--CUUGCUCC---UCac -5'
25701 5' -55.8 NC_005337.1 + 14796 0.7 0.682293
Target:  5'- gGGCGCgGuguuguucuCgUGCGUGAGCGAGGAcgccGUGg -3'
miRNA:   3'- -UCGUGgU---------GgACGCACUUGCUCCU----CAC- -5'
25701 5' -55.8 NC_005337.1 + 22465 0.67 0.851239
Target:  5'- gGGCGauauCCUggGCGUGGuggacuccgccgACGAGGAGUGg -3'
miRNA:   3'- -UCGUggu-GGA--CGCACU------------UGCUCCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 24318 1.09 0.002441
Target:  5'- cAGCACCACCUGCGUGAACGAGGAGUGg -3'
miRNA:   3'- -UCGUGGUGGACGCACUUGCUCCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 25456 0.68 0.808852
Target:  5'- cGGCACCguggacGCgUGCGUGGACGAGa---- -3'
miRNA:   3'- -UCGUGG------UGgACGCACUUGCUCcucac -5'
25701 5' -55.8 NC_005337.1 + 28595 0.72 0.548217
Target:  5'- cAGCGCCACC-GCGUcugGAcgcACGAGGAcaGUGa -3'
miRNA:   3'- -UCGUGGUGGaCGCA---CU---UGCUCCU--CAC- -5'
25701 5' -55.8 NC_005337.1 + 34374 0.69 0.712896
Target:  5'- gAGCGCCGCCgcgGCGagccagagGAGCGuGGcGGUGc -3'
miRNA:   3'- -UCGUGGUGGa--CGCa-------CUUGCuCC-UCAC- -5'
25701 5' -55.8 NC_005337.1 + 37219 0.67 0.82636
Target:  5'- cGCGCCGCgCgUGCGUGGcgAUGAGGuGg- -3'
miRNA:   3'- uCGUGGUG-G-ACGCACU--UGCUCCuCac -5'
25701 5' -55.8 NC_005337.1 + 37300 0.68 0.799847
Target:  5'- cGCACCGCCcgGCc---GCGAGGAGcUGg -3'
miRNA:   3'- uCGUGGUGGa-CGcacuUGCUCCUC-AC- -5'
25701 5' -55.8 NC_005337.1 + 40208 0.66 0.874284
Target:  5'- gAGCACCACCUucuuCGUcAGCGcGGAGa- -3'
miRNA:   3'- -UCGUGGUGGAc---GCAcUUGCuCCUCac -5'
25701 5' -55.8 NC_005337.1 + 40934 0.68 0.790685
Target:  5'- uGCGCguCCUGCGcguUGAAgauCGAGGAcGUGa -3'
miRNA:   3'- uCGUGguGGACGC---ACUU---GCUCCU-CAC- -5'
25701 5' -55.8 NC_005337.1 + 42421 0.69 0.726975
Target:  5'- uGCGCCGgCUucgGCGUGAgcuuccgggccgaguACGGGGAGUu -3'
miRNA:   3'- uCGUGGUgGA---CGCACU---------------UGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 43277 0.67 0.840672
Target:  5'- cAGCGCCACCUGCuacaccuucgcgcuGUucGAccACGAGGAcGUc -3'
miRNA:   3'- -UCGUGGUGGACG--------------CA--CU--UGCUCCU-CAc -5'
25701 5' -55.8 NC_005337.1 + 45720 0.69 0.742862
Target:  5'- cGGC-CCGCCaGCGUGGcgAUGAGGAuGUa -3'
miRNA:   3'- -UCGuGGUGGaCGCACU--UGCUCCU-CAc -5'
25701 5' -55.8 NC_005337.1 + 46304 0.66 0.895326
Target:  5'- uGgGCCACCUGC-UGGACcuccAGGAGg- -3'
miRNA:   3'- uCgUGGUGGACGcACUUGc---UCCUCac -5'
25701 5' -55.8 NC_005337.1 + 47461 0.68 0.781377
Target:  5'- cGGaCACCuucaaguCCUGCGUcuacGACGAGGAgGUGg -3'
miRNA:   3'- -UC-GUGGu------GGACGCAc---UUGCUCCU-CAC- -5'
25701 5' -55.8 NC_005337.1 + 52693 0.68 0.781377
Target:  5'- uGCACCAuCCUG-GUGuacGCGcAGGAGUa -3'
miRNA:   3'- uCGUGGU-GGACgCACu--UGC-UCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 55795 0.72 0.558374
Target:  5'- gAGCGCgACCUGaCGcUGGACGAGGuGcUGa -3'
miRNA:   3'- -UCGUGgUGGAC-GC-ACUUGCUCCuC-AC- -5'
25701 5' -55.8 NC_005337.1 + 56206 0.67 0.817693
Target:  5'- cGCGCUACCUGCa-GGACGuggcGGAGg- -3'
miRNA:   3'- uCGUGGUGGACGcaCUUGCu---CCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.