miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 5' -55.8 NC_005337.1 + 83123 0.67 0.851239
Target:  5'- cGCGUCGCuCUGCGUGGACuuGAGGuAGUc -3'
miRNA:   3'- uCGUGGUG-GACGCACUUG--CUCC-UCAc -5'
25701 5' -55.8 NC_005337.1 + 88393 0.68 0.762357
Target:  5'- cGCACCGCa-GCaaGGACGAGGAGc- -3'
miRNA:   3'- uCGUGGUGgaCGcaCUUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 64143 0.68 0.781377
Target:  5'- aAGCACCugucCCUGaCGgagGGcgGCGAGGAGa- -3'
miRNA:   3'- -UCGUGGu---GGAC-GCa--CU--UGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 40934 0.68 0.790685
Target:  5'- uGCGCguCCUGCGcguUGAAgauCGAGGAcGUGa -3'
miRNA:   3'- uCGUGguGGACGC---ACUU---GCUCCU-CAC- -5'
25701 5' -55.8 NC_005337.1 + 75625 0.68 0.799847
Target:  5'- uGGCGCgCGuguCCcGCGUGcGCGAGGAGa- -3'
miRNA:   3'- -UCGUG-GU---GGaCGCACuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 86105 0.68 0.808852
Target:  5'- cAGCAgCGCCUccGCGc--GCGAGGAGUc -3'
miRNA:   3'- -UCGUgGUGGA--CGCacuUGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 56206 0.67 0.817693
Target:  5'- cGCGCUACCUGCa-GGACGuggcGGAGg- -3'
miRNA:   3'- uCGUGGUGGACGcaCUUGCu---CCUCac -5'
25701 5' -55.8 NC_005337.1 + 10309 0.67 0.834845
Target:  5'- -aCACCauGCCUGUGUucauGACGAuGGAGUGg -3'
miRNA:   3'- ucGUGG--UGGACGCAc---UUGCU-CCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 101205 0.67 0.834845
Target:  5'- gGGCACCGCCUGCuucgcgGAGguCGcGGAGg- -3'
miRNA:   3'- -UCGUGGUGGACGca----CUU--GCuCCUCac -5'
25701 5' -55.8 NC_005337.1 + 84565 0.69 0.73296
Target:  5'- cGCGCgGCagcGCGUGAccGCGAGG-GUGg -3'
miRNA:   3'- uCGUGgUGga-CGCACU--UGCUCCuCAC- -5'
25701 5' -55.8 NC_005337.1 + 42421 0.69 0.726975
Target:  5'- uGCGCCGgCUucgGCGUGAgcuuccgggccgaguACGGGGAGUu -3'
miRNA:   3'- uCGUGGUgGA---CGCACU---------------UGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 133744 0.69 0.722968
Target:  5'- uGGCGCCggcagcuggagcGCCUGCGcc-GCGAGGAGc- -3'
miRNA:   3'- -UCGUGG------------UGGACGCacuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 109986 0.72 0.589132
Target:  5'- gAGCACCAcgcCCUGCGUGAGCGccGGccagcugacGUGg -3'
miRNA:   3'- -UCGUGGU---GGACGCACUUGCucCU---------CAC- -5'
25701 5' -55.8 NC_005337.1 + 92723 0.7 0.651307
Target:  5'- aAGCGCgugCGCCUGC-UGGAgGAGGAGg- -3'
miRNA:   3'- -UCGUG---GUGGACGcACUUgCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 68246 0.7 0.651307
Target:  5'- gAGCGCgGCCggcGCGUGGGCGAGcgucGAGg- -3'
miRNA:   3'- -UCGUGgUGGa--CGCACUUGCUC----CUCac -5'
25701 5' -55.8 NC_005337.1 + 86246 0.7 0.652344
Target:  5'- gGGCACCGUCgcguugcgcacgaagGcCGUGAACGAGGAGg- -3'
miRNA:   3'- -UCGUGGUGGa--------------C-GCACUUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 90263 0.7 0.671995
Target:  5'- gAGCACCACC-GCG-GAGCu-GGAGUu -3'
miRNA:   3'- -UCGUGGUGGaCGCaCUUGcuCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 99390 0.7 0.702753
Target:  5'- cGGCACCACCUGCcgGUGcugcgcaccgcgGGCGGcGGGUGc -3'
miRNA:   3'- -UCGUGGUGGACG--CAC------------UUGCUcCUCAC- -5'
25701 5' -55.8 NC_005337.1 + 126449 0.7 0.702753
Target:  5'- uGUACCACCgcgcgcugucGCGgagGAugGAGGaAGUGa -3'
miRNA:   3'- uCGUGGUGGa---------CGCa--CUugCUCC-UCAC- -5'
25701 5' -55.8 NC_005337.1 + 34374 0.69 0.712896
Target:  5'- gAGCGCCGCCgcgGCGagccagagGAGCGuGGcGGUGc -3'
miRNA:   3'- -UCGUGGUGGa--CGCa-------CUUGCuCC-UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.