miRNA display CGI


Results 21 - 40 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 118794 0.75 0.238201
Target:  5'- cGGCGCCGUCguGC-CGCGCGCGCc-- -3'
miRNA:   3'- -UCGCGGCGGguCGuGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 71280 0.75 0.238201
Target:  5'- uGCGCCGCgUGGCGCugGUGCGCUu- -3'
miRNA:   3'- uCGCGGCGgGUCGUGugCGUGUGAcu -5'
25711 3' -60 NC_005337.1 + 76986 0.74 0.249867
Target:  5'- gAGCGgCGCCgCAGC-CGCGCGCGCcGGc -3'
miRNA:   3'- -UCGCgGCGG-GUCGuGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 91503 0.74 0.249867
Target:  5'- cGCuGCCGCCCgAGCACACGaaCGCGCggGAc -3'
miRNA:   3'- uCG-CGGCGGG-UCGUGUGC--GUGUGa-CU- -5'
25711 3' -60 NC_005337.1 + 69442 0.74 0.249867
Target:  5'- cGGCGCCaGCUC-GCGCGCGCACAUg-- -3'
miRNA:   3'- -UCGCGG-CGGGuCGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 95292 0.74 0.255875
Target:  5'- cAGCGcCCGgCCGGUgacGCACGCGCACUcGGg -3'
miRNA:   3'- -UCGC-GGCgGGUCG---UGUGCGUGUGA-CU- -5'
25711 3' -60 NC_005337.1 + 89203 0.74 0.262001
Target:  5'- -uCGCCGCCCgAGCAguCGCuguCGCUGAa -3'
miRNA:   3'- ucGCGGCGGG-UCGUguGCGu--GUGACU- -5'
25711 3' -60 NC_005337.1 + 95135 0.74 0.268246
Target:  5'- cAGCGUCGCCgucauaAGCACgagcgaGCGCACGCUGc -3'
miRNA:   3'- -UCGCGGCGGg-----UCGUG------UGCGUGUGACu -5'
25711 3' -60 NC_005337.1 + 25108 0.74 0.268246
Target:  5'- cGCGCgGCgCGGCGCGCGCggACGCgUGAa -3'
miRNA:   3'- uCGCGgCGgGUCGUGUGCG--UGUG-ACU- -5'
25711 3' -60 NC_005337.1 + 62606 0.74 0.281095
Target:  5'- uGuCGCCGCCguGCACcCGCGCGUUGAa -3'
miRNA:   3'- uC-GCGGCGGguCGUGuGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 85648 0.74 0.281095
Target:  5'- uGGCGuCCGCCgAGCACAUGUucuGCACaGAc -3'
miRNA:   3'- -UCGC-GGCGGgUCGUGUGCG---UGUGaCU- -5'
25711 3' -60 NC_005337.1 + 97734 0.74 0.281095
Target:  5'- cGGCGCCGCCCAGCcGCcggggACGCcCGCg-- -3'
miRNA:   3'- -UCGCGGCGGGUCG-UG-----UGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 65962 0.74 0.281095
Target:  5'- cGUGCCGCCCuccucgGGCACGCGCGucCACg-- -3'
miRNA:   3'- uCGCGGCGGG------UCGUGUGCGU--GUGacu -5'
25711 3' -60 NC_005337.1 + 2069 0.74 0.281095
Target:  5'- cGUGCCGCagCAGCAgGCGCACGgUGu -3'
miRNA:   3'- uCGCGGCGg-GUCGUgUGCGUGUgACu -5'
25711 3' -60 NC_005337.1 + 129133 0.74 0.283722
Target:  5'- cGCGCUGCaccucuaccuccacaCCAGaCACcCGCGCACUGAc -3'
miRNA:   3'- uCGCGGCG---------------GGUC-GUGuGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 34794 0.73 0.287034
Target:  5'- uAGCGCCGCacggCCAcgaagacgcccucGCGCACGCGCGCg-- -3'
miRNA:   3'- -UCGCGGCG----GGU-------------CGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 19541 0.73 0.290376
Target:  5'- gAGC-CCGUCCAGCACGCGCcggacgucguaaacgGCGgUGAg -3'
miRNA:   3'- -UCGcGGCGGGUCGUGUGCG---------------UGUgACU- -5'
25711 3' -60 NC_005337.1 + 124516 0.73 0.294427
Target:  5'- cGGUGCCaaCCCGGCGCcggccgACGCGCGCUGc -3'
miRNA:   3'- -UCGCGGc-GGGUCGUG------UGCGUGUGACu -5'
25711 3' -60 NC_005337.1 + 122867 0.73 0.294427
Target:  5'- -cCGCUGUCCgugucGGcCGCGCGCACGCUGAa -3'
miRNA:   3'- ucGCGGCGGG-----UC-GUGUGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 25721 0.73 0.294427
Target:  5'- cGCGCCGCCagcgucaGGCGCGCGCcccGCACc-- -3'
miRNA:   3'- uCGCGGCGGg------UCGUGUGCG---UGUGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.