miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 16381 1.08 0.001034
Target:  5'- cAGCGCCGCCCAGCACACGCACACUGAg -3'
miRNA:   3'- -UCGCGGCGGGUCGUGUGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 33030 0.85 0.050656
Target:  5'- cGCGCCGUCCAGCgcgaGCACGCGCGCgGAc -3'
miRNA:   3'- uCGCGGCGGGUCG----UGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 122764 0.82 0.077646
Target:  5'- uGCGCUGCCCGGCGCACGaCGCgucuucgcauaACUGAa -3'
miRNA:   3'- uCGCGGCGGGUCGUGUGC-GUG-----------UGACU- -5'
25711 3' -60 NC_005337.1 + 24808 0.78 0.148782
Target:  5'- aAGCG-CGCCCAcgcGCGCACGCACACg-- -3'
miRNA:   3'- -UCGCgGCGGGU---CGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 78130 0.78 0.152608
Target:  5'- cGGCcuuGCCGCCCcgcuGCACgccGCGCACGCUGGc -3'
miRNA:   3'- -UCG---CGGCGGGu---CGUG---UGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 122430 0.77 0.173109
Target:  5'- cGCGCCGaUgCGGCACAUGCACGCcGAc -3'
miRNA:   3'- uCGCGGC-GgGUCGUGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 65935 0.77 0.181976
Target:  5'- cGCGCCGUCCuccGGCACGgGCACGCg-- -3'
miRNA:   3'- uCGCGGCGGG---UCGUGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 15508 0.76 0.200922
Target:  5'- cAGCGUCGCCagcaAGCAuguCACGCACACcGAc -3'
miRNA:   3'- -UCGCGGCGGg---UCGU---GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 11881 0.76 0.200922
Target:  5'- cGCGCCGCCgcgCAGCACgaccucGCGCACGCa-- -3'
miRNA:   3'- uCGCGGCGG---GUCGUG------UGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 39481 0.76 0.205919
Target:  5'- cGUGCCGCgCGaCGCGCGCGCGCUGc -3'
miRNA:   3'- uCGCGGCGgGUcGUGUGCGUGUGACu -5'
25711 3' -60 NC_005337.1 + 132741 0.76 0.211024
Target:  5'- cGGuCGCCGCCC-GCACACGaaguggcggaCGCGCUGGc -3'
miRNA:   3'- -UC-GCGGCGGGuCGUGUGC----------GUGUGACU- -5'
25711 3' -60 NC_005337.1 + 132845 0.75 0.215711
Target:  5'- cGGCGCCGCcgcgcucgcagacCCAGacaaACACGCACACgcgGAc -3'
miRNA:   3'- -UCGCGGCG-------------GGUCg---UGUGCGUGUGa--CU- -5'
25711 3' -60 NC_005337.1 + 105051 0.75 0.216237
Target:  5'- aGGCGaCGCCCGGC-CGCGCgGCGCUGc -3'
miRNA:   3'- -UCGCgGCGGGUCGuGUGCG-UGUGACu -5'
25711 3' -60 NC_005337.1 + 126410 0.75 0.216237
Target:  5'- cGGCcaagGCCGCCCGGCGCGCgacgGCGCGCg-- -3'
miRNA:   3'- -UCG----CGGCGGGUCGUGUG----CGUGUGacu -5'
25711 3' -60 NC_005337.1 + 82549 0.75 0.22156
Target:  5'- cAGCGCCGCaaguuggugugCAGCACG-GCGCGCUGGa -3'
miRNA:   3'- -UCGCGGCGg----------GUCGUGUgCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 43268 0.75 0.22372
Target:  5'- gAGCGCCG-CCAGCAUccggcugguaaccuCGCAUACUGAa -3'
miRNA:   3'- -UCGCGGCgGGUCGUGu-------------GCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 38475 0.75 0.226994
Target:  5'- cGGUGCgCGCCgGGCGCGCGCGuCGCcGAg -3'
miRNA:   3'- -UCGCG-GCGGgUCGUGUGCGU-GUGaCU- -5'
25711 3' -60 NC_005337.1 + 121350 0.75 0.232541
Target:  5'- cGCGCCGCaCCAGC-CACucgGCGCACggGAa -3'
miRNA:   3'- uCGCGGCG-GGUCGuGUG---CGUGUGa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.