miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 701 0.66 0.710765
Target:  5'- aGGCGaaGCUCGcGCGCACGCcCGCg-- -3'
miRNA:   3'- -UCGCggCGGGU-CGUGUGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 701 0.66 0.710765
Target:  5'- aGGCGaaGCUCGcGCGCACGCcCGCg-- -3'
miRNA:   3'- -UCGCggCGGGU-CGUGUGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 786 0.66 0.698843
Target:  5'- cGCGCCGCcgacgacgaggcagaCCAGCuccgcggagccgucCGCGCGCGCgGGc -3'
miRNA:   3'- uCGCGGCG---------------GGUCGu-------------GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 786 0.66 0.698843
Target:  5'- cGCGCCGCcgacgacgaggcagaCCAGCuccgcggagccgucCGCGCGCGCgGGc -3'
miRNA:   3'- uCGCGGCG---------------GGUCGu-------------GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 870 0.69 0.50095
Target:  5'- gGGCGCgGCCgGGCGgAagaGCGCGCcGAg -3'
miRNA:   3'- -UCGCGgCGGgUCGUgUg--CGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 870 0.69 0.50095
Target:  5'- gGGCGCgGCCgGGCGgAagaGCGCGCcGAg -3'
miRNA:   3'- -UCGCGgCGGgUCGUgUg--CGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 1190 0.68 0.559638
Target:  5'- uGCGCgaGCgCGGCACGgGCGCGCa-- -3'
miRNA:   3'- uCGCGg-CGgGUCGUGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 1869 0.66 0.700836
Target:  5'- cGUGuCCGCuguucaCCAGCGCuAUGCGCACUc- -3'
miRNA:   3'- uCGC-GGCG------GGUCGUG-UGCGUGUGAcu -5'
25711 3' -60 NC_005337.1 + 2069 0.74 0.281095
Target:  5'- cGUGCCGCagCAGCAgGCGCACGgUGu -3'
miRNA:   3'- uCGCGGCGg-GUCGUgUGCGUGUgACu -5'
25711 3' -60 NC_005337.1 + 2101 0.67 0.599819
Target:  5'- cGCGCCgcgaGCCCGGU-CAgGCACGCg-- -3'
miRNA:   3'- uCGCGG----CGGGUCGuGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 2163 0.67 0.599819
Target:  5'- gAGCcuGCCGCgCaCGGCGCcgACGCGCACg-- -3'
miRNA:   3'- -UCG--CGGCG-G-GUCGUG--UGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 2211 0.72 0.329896
Target:  5'- gGGCGCgGCCCGGgcCGCgaGCGCGCGCagGAa -3'
miRNA:   3'- -UCGCGgCGGGUC--GUG--UGCGUGUGa-CU- -5'
25711 3' -60 NC_005337.1 + 2613 0.67 0.620077
Target:  5'- --aGUCGUUCAGCGCgGCGCGCACgGGc -3'
miRNA:   3'- ucgCGGCGGGUCGUG-UGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 2655 0.67 0.599819
Target:  5'- uGGCGCCGgCCgccuccacgcugAGUGCGCGCGaGCUGu -3'
miRNA:   3'- -UCGCGGCgGG------------UCGUGUGCGUgUGACu -5'
25711 3' -60 NC_005337.1 + 2924 0.7 0.427308
Target:  5'- cGGCGUCGCCgGagugccgacGCGCACGgCGCGCaUGAg -3'
miRNA:   3'- -UCGCGGCGGgU---------CGUGUGC-GUGUG-ACU- -5'
25711 3' -60 NC_005337.1 + 3688 0.69 0.529997
Target:  5'- -aCGCaCGCCCAuGCACGCGUGCAgcagggucCUGGu -3'
miRNA:   3'- ucGCG-GCGGGU-CGUGUGCGUGU--------GACU- -5'
25711 3' -60 NC_005337.1 + 4128 0.7 0.454199
Target:  5'- aAGCGCgcgaGCgCCAGCGCGCGCGacCACg-- -3'
miRNA:   3'- -UCGCGg---CG-GGUCGUGUGCGU--GUGacu -5'
25711 3' -60 NC_005337.1 + 5553 0.67 0.630223
Target:  5'- cAGCaGCgGCUCgcGGUACACGCGCGCc-- -3'
miRNA:   3'- -UCG-CGgCGGG--UCGUGUGCGUGUGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.