miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 109426 0.66 0.69085
Target:  5'- cGCGaccaCGUCCucgAGCACGCGC-CGCUcGAg -3'
miRNA:   3'- uCGCg---GCGGG---UCGUGUGCGuGUGA-CU- -5'
25711 3' -60 NC_005337.1 + 90371 0.66 0.710765
Target:  5'- cGCGCgGCCUcuucccGGcCGCGCGUGCACa-- -3'
miRNA:   3'- uCGCGgCGGG------UC-GUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 51249 0.66 0.669733
Target:  5'- cGGUGuCCGCCguGUACGgCGUcaccgaggauaagGCGCUGAa -3'
miRNA:   3'- -UCGC-GGCGGguCGUGU-GCG-------------UGUGACU- -5'
25711 3' -60 NC_005337.1 + 40138 0.66 0.670743
Target:  5'- aGGCGCCGcCCCGGgaaAUACGUGCucaUGGu -3'
miRNA:   3'- -UCGCGGC-GGGUCg--UGUGCGUGug-ACU- -5'
25711 3' -60 NC_005337.1 + 82734 0.66 0.660638
Target:  5'- cGCgGCCuccagGCCCGGCAgcCGCACGCcGAa -3'
miRNA:   3'- uCG-CGG-----CGGGUCGUguGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 87781 0.66 0.670743
Target:  5'- cGGCGCCGCggugUCGGC-CGCGCGgGCc-- -3'
miRNA:   3'- -UCGCGGCG----GGUCGuGUGCGUgUGacu -5'
25711 3' -60 NC_005337.1 + 80499 0.66 0.680816
Target:  5'- uGCGCCccgcgGCCgGGgGCGgGCACGCcGAg -3'
miRNA:   3'- uCGCGG-----CGGgUCgUGUgCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 133636 0.66 0.680816
Target:  5'- cGuCGCCGUgCAGgACGuCGCcGCGCUGGa -3'
miRNA:   3'- uC-GCGGCGgGUCgUGU-GCG-UGUGACU- -5'
25711 3' -60 NC_005337.1 + 12683 0.66 0.680816
Target:  5'- cAGCuccuCCuCCCGGCGCGCGUACAUg-- -3'
miRNA:   3'- -UCGc---GGcGGGUCGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 84693 0.66 0.670743
Target:  5'- uGGuCGCCGaucccacggaCCCGGCGCugGaCAacgaGCUGAa -3'
miRNA:   3'- -UC-GCGGC----------GGGUCGUGugC-GUg---UGACU- -5'
25711 3' -60 NC_005337.1 + 48390 0.66 0.69085
Target:  5'- cGCGCCuUCgAGC-CGCGCACGgaGAc -3'
miRNA:   3'- uCGCGGcGGgUCGuGUGCGUGUgaCU- -5'
25711 3' -60 NC_005337.1 + 10048 0.66 0.69085
Target:  5'- aGGCGCCGcCCCAGaACuCGCAgUACUcGGa -3'
miRNA:   3'- -UCGCGGC-GGGUCgUGuGCGU-GUGA-CU- -5'
25711 3' -60 NC_005337.1 + 77838 0.66 0.670743
Target:  5'- cGCGCUGCCuugagcCAGCugucgcuCACGCAC-UUGAa -3'
miRNA:   3'- uCGCGGCGG------GUCGu------GUGCGUGuGACU- -5'
25711 3' -60 NC_005337.1 + 99491 0.66 0.660638
Target:  5'- --gGCCGUgCGGCGCuACGCGgACUGc -3'
miRNA:   3'- ucgCGGCGgGUCGUG-UGCGUgUGACu -5'
25711 3' -60 NC_005337.1 + 16018 0.66 0.69085
Target:  5'- cGCGCgGCCggcaGGUACACGCGCu---- -3'
miRNA:   3'- uCGCGgCGGg---UCGUGUGCGUGugacu -5'
25711 3' -60 NC_005337.1 + 69889 0.66 0.680816
Target:  5'- uGUGCCGCCgCuccgacaacGUGCuccuGCGCGCGCUGGa -3'
miRNA:   3'- uCGCGGCGG-Gu--------CGUG----UGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 70273 0.66 0.660638
Target:  5'- uGUGCCggaaGCCgCGGCACAaGCACGCg-- -3'
miRNA:   3'- uCGCGG----CGG-GUCGUGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 46355 0.66 0.660638
Target:  5'- cGUGCacgaaGCgCCGGCGCAgGCGCGCc-- -3'
miRNA:   3'- uCGCGg----CG-GGUCGUGUgCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 73165 0.66 0.69085
Target:  5'- gGGCG-CGCCguGCGCAaguucuCGUACACgGAc -3'
miRNA:   3'- -UCGCgGCGGguCGUGU------GCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 104866 0.66 0.660638
Target:  5'- -uCGCCGCCCGGauaaACG-GCACACa-- -3'
miRNA:   3'- ucGCGGCGGGUCg---UGUgCGUGUGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.