miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 23078 0.72 0.329896
Target:  5'- cGGCgGCCguGCCCGGCAUcguGCGCGCGgUGGu -3'
miRNA:   3'- -UCG-CGG--CGGGUCGUG---UGCGUGUgACU- -5'
25711 3' -60 NC_005337.1 + 89203 0.74 0.262001
Target:  5'- -uCGCCGCCCgAGCAguCGCuguCGCUGAa -3'
miRNA:   3'- ucGCGGCGGG-UCGUguGCGu--GUGACU- -5'
25711 3' -60 NC_005337.1 + 2069 0.74 0.281095
Target:  5'- cGUGCCGCagCAGCAgGCGCACGgUGu -3'
miRNA:   3'- uCGCGGCGg-GUCGUgUGCGUGUgACu -5'
25711 3' -60 NC_005337.1 + 129133 0.74 0.283722
Target:  5'- cGCGCUGCaccucuaccuccacaCCAGaCACcCGCGCACUGAc -3'
miRNA:   3'- uCGCGGCG---------------GGUC-GUGuGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 19541 0.73 0.290376
Target:  5'- gAGC-CCGUCCAGCACGCGCcggacgucguaaacgGCGgUGAg -3'
miRNA:   3'- -UCGcGGCGGGUCGUGUGCG---------------UGUgACU- -5'
25711 3' -60 NC_005337.1 + 25721 0.73 0.294427
Target:  5'- cGCGCCGCCagcgucaGGCGCGCGCcccGCACc-- -3'
miRNA:   3'- uCGCGGCGGg------UCGUGUGCG---UGUGacu -5'
25711 3' -60 NC_005337.1 + 45741 0.73 0.297152
Target:  5'- cGGCGCCGUCUAGCACGgccccgcguucguacCGCgcgGCGCUGu -3'
miRNA:   3'- -UCGCGGCGGGUCGUGU---------------GCG---UGUGACu -5'
25711 3' -60 NC_005337.1 + 17268 0.73 0.301276
Target:  5'- gAGCGUgGCCUGGCGCACGUugaaGCUGu -3'
miRNA:   3'- -UCGCGgCGGGUCGUGUGCGug--UGACu -5'
25711 3' -60 NC_005337.1 + 133402 0.73 0.32183
Target:  5'- cGGCGCgcucuucCGCCCGGC-CGCGCccGCGCUGc -3'
miRNA:   3'- -UCGCG-------GCGGGUCGuGUGCG--UGUGACu -5'
25711 3' -60 NC_005337.1 + 95292 0.74 0.255875
Target:  5'- cAGCGcCCGgCCGGUgacGCACGCGCACUcGGg -3'
miRNA:   3'- -UCGC-GGCgGGUCG---UGUGCGUGUGA-CU- -5'
25711 3' -60 NC_005337.1 + 76986 0.74 0.249867
Target:  5'- gAGCGgCGCCgCAGC-CGCGCGCGCcGGc -3'
miRNA:   3'- -UCGCgGCGG-GUCGuGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 71280 0.75 0.238201
Target:  5'- uGCGCCGCgUGGCGCugGUGCGCUu- -3'
miRNA:   3'- uCGCGGCGgGUCGUGugCGUGUGAcu -5'
25711 3' -60 NC_005337.1 + 24808 0.78 0.148782
Target:  5'- aAGCG-CGCCCAcgcGCGCACGCACACg-- -3'
miRNA:   3'- -UCGCgGCGGGU---CGUGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 78130 0.78 0.152608
Target:  5'- cGGCcuuGCCGCCCcgcuGCACgccGCGCACGCUGGc -3'
miRNA:   3'- -UCG---CGGCGGGu---CGUG---UGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 1108 0.77 0.163389
Target:  5'- cAGCGCCGCCgccgggagcagccgCAGCACGCGCGCGa--- -3'
miRNA:   3'- -UCGCGGCGG--------------GUCGUGUGCGUGUgacu -5'
25711 3' -60 NC_005337.1 + 122430 0.77 0.173109
Target:  5'- cGCGCCGaUgCGGCACAUGCACGCcGAc -3'
miRNA:   3'- uCGCGGC-GgGUCGUGUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 126410 0.75 0.216237
Target:  5'- cGGCcaagGCCGCCCGGCGCGCgacgGCGCGCg-- -3'
miRNA:   3'- -UCG----CGGCGGGUCGUGUG----CGUGUGacu -5'
25711 3' -60 NC_005337.1 + 82549 0.75 0.22156
Target:  5'- cAGCGCCGCaaguuggugugCAGCACG-GCGCGCUGGa -3'
miRNA:   3'- -UCGCGGCGg----------GUCGUGUgCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 43268 0.75 0.22372
Target:  5'- gAGCGCCG-CCAGCAUccggcugguaaccuCGCAUACUGAa -3'
miRNA:   3'- -UCGCGGCgGGUCGUGu-------------GCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 38475 0.75 0.226994
Target:  5'- cGGUGCgCGCCgGGCGCGCGCGuCGCcGAg -3'
miRNA:   3'- -UCGCG-GCGGgUCGUGUGCGU-GUGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.