miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 5' -59.6 NC_005337.1 + 4192 1.1 0.000993
Target:  5'- cCGGCCUCAACGGCCUGCGUCAGCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCGGACGCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 114115 0.8 0.120155
Target:  5'- uGGCCUCcgccGCGGCCUGCGgCAGCGu- -3'
miRNA:   3'- gCCGGAGu---UGCCGGACGCaGUCGCug -5'
25735 5' -59.6 NC_005337.1 + 51696 0.76 0.224518
Target:  5'- aGGCCagucUGGCCUGCGaCGGCGACg -3'
miRNA:   3'- gCCGGaguuGCCGGACGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 100690 0.75 0.252992
Target:  5'- uCGGgCUCGagACGGUCUGUcUCGGCGACu -3'
miRNA:   3'- -GCCgGAGU--UGCCGGACGcAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 90927 0.75 0.259032
Target:  5'- gCGGCgUCuucccGGCGGCCagcGCGUCGGCGAg -3'
miRNA:   3'- -GCCGgAG-----UUGCCGGa--CGCAGUCGCUg -5'
25735 5' -59.6 NC_005337.1 + 21874 0.75 0.259032
Target:  5'- aGGCCUaccgcACGGCCUGCG-CGGCG-Cu -3'
miRNA:   3'- gCCGGAgu---UGCCGGACGCaGUCGCuG- -5'
25735 5' -59.6 NC_005337.1 + 36488 0.75 0.259032
Target:  5'- aCGGCCUUGgccGCGGCCgcgGCGcUCGgcGCGACg -3'
miRNA:   3'- -GCCGGAGU---UGCCGGa--CGC-AGU--CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 6114 0.75 0.271464
Target:  5'- gCGGCCacgugCAGCGGCgUGCGUCcgAGCG-Cg -3'
miRNA:   3'- -GCCGGa----GUUGCCGgACGCAG--UCGCuG- -5'
25735 5' -59.6 NC_005337.1 + 130091 0.75 0.271464
Target:  5'- aGGCCguugaGGCCgGgGUCAGCGACg -3'
miRNA:   3'- gCCGGaguugCCGGaCgCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 102808 0.74 0.277858
Target:  5'- -cGCCUUcGCGGCgCUGC-UCAGCGGCa -3'
miRNA:   3'- gcCGGAGuUGCCG-GACGcAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 34726 0.74 0.297758
Target:  5'- gGGCCUCcuCGcGCgaGCaGUCGGCGGCg -3'
miRNA:   3'- gCCGGAGuuGC-CGgaCG-CAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 133701 0.73 0.318746
Target:  5'- gCGGCUUCcgcGCGGCCgcgGCGUaCGcGCGGCg -3'
miRNA:   3'- -GCCGGAGu--UGCCGGa--CGCA-GU-CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 133701 0.73 0.318746
Target:  5'- gCGGCUUCcgcGCGGCCgcgGCGUaCGcGCGGCg -3'
miRNA:   3'- -GCCGGAGu--UGCCGGa--CGCA-GU-CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 118224 0.73 0.340826
Target:  5'- --aCUUCAGCGGCCcGCG-CGGCGGCa -3'
miRNA:   3'- gccGGAGUUGCCGGaCGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 81896 0.73 0.340826
Target:  5'- aGGCgUCcACGGCCccgcaGcCGUCAGCGGCc -3'
miRNA:   3'- gCCGgAGuUGCCGGa----C-GCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 70795 0.73 0.348428
Target:  5'- aGGCCaugCGGCGGCUggugaGCGUCAuCGACg -3'
miRNA:   3'- gCCGGa--GUUGCCGGa----CGCAGUcGCUG- -5'
25735 5' -59.6 NC_005337.1 + 760 0.72 0.35615
Target:  5'- gCGGCCUCGACGGCggccaugugCUGCGcgCcGcCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCG---------GACGCa-GuC-GCUG- -5'
25735 5' -59.6 NC_005337.1 + 760 0.72 0.35615
Target:  5'- gCGGCCUCGACGGCggccaugugCUGCGcgCcGcCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCG---------GACGCa-GuC-GCUG- -5'
25735 5' -59.6 NC_005337.1 + 90050 0.72 0.363991
Target:  5'- aCGGCCUCGGCGcucGCCcGCuccgCGGCGGCc -3'
miRNA:   3'- -GCCGGAGUUGC---CGGaCGca--GUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 51906 0.72 0.363991
Target:  5'- aGGcCCUCGGC-GCCgUGCaGUCGGCGGCc -3'
miRNA:   3'- gCC-GGAGUUGcCGG-ACG-CAGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.