Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25735 | 5' | -59.6 | NC_005337.1 | + | 100605 | 0.69 | 0.533453 |
Target: 5'- cCGGCCUCGGCgccucgcuGGCCaaggugGUGUacuGCGACa -3' miRNA: 3'- -GCCGGAGUUG--------CCGGa-----CGCAgu-CGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 128005 | 0.71 | 0.422139 |
Target: 5'- gCGGCugCUCcugGACGccggcGCCaGCGUCAGCGACg -3' miRNA: 3'- -GCCG--GAG---UUGC-----CGGaCGCAGUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 44479 | 0.71 | 0.439751 |
Target: 5'- aGGCCaguUCGaggcGCGGCC-GCGUCAcCGACg -3' miRNA: 3'- gCCGG---AGU----UGCCGGaCGCAGUcGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 68250 | 0.71 | 0.443324 |
Target: 5'- gCGGCCggcgCGugGGCgaGCGUCGaggacuucgacgucuGCGGCc -3' miRNA: 3'- -GCCGGa---GUugCCGgaCGCAGU---------------CGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 66082 | 0.7 | 0.476185 |
Target: 5'- gCGGCCgCGGCGGCggagGCGcUguGCGGCg -3' miRNA: 3'- -GCCGGaGUUGCCGga--CGC-AguCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 52173 | 0.7 | 0.485528 |
Target: 5'- gCGGCUUCGACGGC--GCG-CAGaCGGCc -3' miRNA: 3'- -GCCGGAGUUGCCGgaCGCaGUC-GCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 110526 | 0.7 | 0.485528 |
Target: 5'- gCGGCUugUCGGCGGCCUucugcugccGCuccgCGGCGGCg -3' miRNA: 3'- -GCCGG--AGUUGCCGGA---------CGca--GUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 16703 | 0.7 | 0.504468 |
Target: 5'- gCGGCCUCcGCuGCCgggugacGCGUCAGUaGCa -3' miRNA: 3'- -GCCGGAGuUGcCGGa------CGCAGUCGcUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 56101 | 0.69 | 0.514058 |
Target: 5'- aCGGCUUCGGCgugacguucagGGaCCUGCGUCc-CGACg -3' miRNA: 3'- -GCCGGAGUUG-----------CC-GGACGCAGucGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 47543 | 0.71 | 0.413494 |
Target: 5'- gGGaCCUCGugGGCCUGaugCcGCGACu -3' miRNA: 3'- gCC-GGAGUugCCGGACgcaGuCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 51906 | 0.72 | 0.363991 |
Target: 5'- aGGcCCUCGGC-GCCgUGCaGUCGGCGGCc -3' miRNA: 3'- gCC-GGAGUUGcCGG-ACG-CAGUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 760 | 0.72 | 0.35615 |
Target: 5'- gCGGCCUCGACGGCggccaugugCUGCGcgCcGcCGACg -3' miRNA: 3'- -GCCGGAGUUGCCG---------GACGCa-GuC-GCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 21874 | 0.75 | 0.259032 |
Target: 5'- aGGCCUaccgcACGGCCUGCG-CGGCG-Cu -3' miRNA: 3'- gCCGGAgu---UGCCGGACGCaGUCGCuG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 36488 | 0.75 | 0.259032 |
Target: 5'- aCGGCCUUGgccGCGGCCgcgGCGcUCGgcGCGACg -3' miRNA: 3'- -GCCGGAGU---UGCCGGa--CGC-AGU--CGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 90927 | 0.75 | 0.259032 |
Target: 5'- gCGGCgUCuucccGGCGGCCagcGCGUCGGCGAg -3' miRNA: 3'- -GCCGgAG-----UUGCCGGa--CGCAGUCGCUg -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 130091 | 0.75 | 0.271464 |
Target: 5'- aGGCCguugaGGCCgGgGUCAGCGACg -3' miRNA: 3'- gCCGGaguugCCGGaCgCAGUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 102808 | 0.74 | 0.277858 |
Target: 5'- -cGCCUUcGCGGCgCUGC-UCAGCGGCa -3' miRNA: 3'- gcCGGAGuUGCCG-GACGcAGUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 133701 | 0.73 | 0.318746 |
Target: 5'- gCGGCUUCcgcGCGGCCgcgGCGUaCGcGCGGCg -3' miRNA: 3'- -GCCGGAGu--UGCCGGa--CGCA-GU-CGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 81896 | 0.73 | 0.340826 |
Target: 5'- aGGCgUCcACGGCCccgcaGcCGUCAGCGGCc -3' miRNA: 3'- gCCGgAGuUGCCGGa----C-GCAGUCGCUG- -5' |
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25735 | 5' | -59.6 | NC_005337.1 | + | 70795 | 0.73 | 0.348428 |
Target: 5'- aGGCCaugCGGCGGCUggugaGCGUCAuCGACg -3' miRNA: 3'- gCCGGa--GUUGCCGGa----CGCAGUcGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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