miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 5' -59.6 NC_005337.1 + 760 0.72 0.35615
Target:  5'- gCGGCCUCGACGGCggccaugugCUGCGcgCcGcCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCG---------GACGCa-GuC-GCUG- -5'
25735 5' -59.6 NC_005337.1 + 760 0.72 0.35615
Target:  5'- gCGGCCUCGACGGCggccaugugCUGCGcgCcGcCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCG---------GACGCa-GuC-GCUG- -5'
25735 5' -59.6 NC_005337.1 + 1943 0.67 0.683627
Target:  5'- uCGGUCgugcgCAugucGCuGCCcGCGUCAGCGAg -3'
miRNA:   3'- -GCCGGa----GU----UGcCGGaCGCAGUCGCUg -5'
25735 5' -59.6 NC_005337.1 + 2295 0.67 0.643405
Target:  5'- aGGCUgCGGCggGGUCgggaGCGUCGGUGGCg -3'
miRNA:   3'- gCCGGaGUUG--CCGGa---CGCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 3268 0.68 0.62321
Target:  5'- gCGGUgcgCGGCGGCCacGUG-CAGCGGCg -3'
miRNA:   3'- -GCCGga-GUUGCCGGa-CGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 3455 0.67 0.683627
Target:  5'- -cGCCUgaucaCGGCGGCaCUGgGUCGucGCGACu -3'
miRNA:   3'- gcCGGA-----GUUGCCG-GACgCAGU--CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 3652 0.67 0.687621
Target:  5'- gCGGCCUCGucguccgcgcagucgGgGGuCUUGCGUCGcgcccgacGCGGCu -3'
miRNA:   3'- -GCCGGAGU---------------UgCC-GGACGCAGU--------CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 4117 0.7 0.485528
Target:  5'- aCGGCCUCcgaaAGCGcGCgaGCGcCAGCGcGCg -3'
miRNA:   3'- -GCCGGAG----UUGC-CGgaCGCaGUCGC-UG- -5'
25735 5' -59.6 NC_005337.1 + 4192 1.1 0.000993
Target:  5'- cCGGCCUCAACGGCCUGCGUCAGCGACg -3'
miRNA:   3'- -GCCGGAGUUGCCGGACGCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 5861 0.7 0.485528
Target:  5'- uGGCCU--GCGGCUgcgugGCGagAGCGGCc -3'
miRNA:   3'- gCCGGAguUGCCGGa----CGCagUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 6114 0.75 0.271464
Target:  5'- gCGGCCacgugCAGCGGCgUGCGUCcgAGCG-Cg -3'
miRNA:   3'- -GCCGGa----GUUGCCGgACGCAG--UCGCuG- -5'
25735 5' -59.6 NC_005337.1 + 9718 0.67 0.633308
Target:  5'- gCGGCCUCGcgcaGCGgggaggagaGCCUgaagcagcgcGCGUCGGcCGGCg -3'
miRNA:   3'- -GCCGGAGU----UGC---------CGGA----------CGCAGUC-GCUG- -5'
25735 5' -59.6 NC_005337.1 + 9742 0.66 0.729997
Target:  5'- gCGGUCaCGACGGCgCUgGCGUCGaugucgguaucgucGCGAUg -3'
miRNA:   3'- -GCCGGaGUUGCCG-GA-CGCAGU--------------CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 10250 0.67 0.673612
Target:  5'- gCGGCCUUcGCGGg--GCGccuccaUCGGCGGCg -3'
miRNA:   3'- -GCCGGAGuUGCCggaCGC------AGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 11619 0.66 0.703523
Target:  5'- gGGCCaccugcUCGACGaGUC-GCGUCuuGCGGCg -3'
miRNA:   3'- gCCGG------AGUUGC-CGGaCGCAGu-CGCUG- -5'
25735 5' -59.6 NC_005337.1 + 14943 0.68 0.62321
Target:  5'- aGGCCUUgcgcagGAUGGCCUcGCG-CAGC-ACa -3'
miRNA:   3'- gCCGGAG------UUGCCGGA-CGCaGUCGcUG- -5'
25735 5' -59.6 NC_005337.1 + 15838 0.7 0.476185
Target:  5'- uCGGCUUCGcACGGCgaGCGcgggcUUGGCGGCu -3'
miRNA:   3'- -GCCGGAGU-UGCCGgaCGC-----AGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 16703 0.7 0.504468
Target:  5'- gCGGCCUCcGCuGCCgggugacGCGUCAGUaGCa -3'
miRNA:   3'- -GCCGGAGuUGcCGGa------CGCAGUCGcUG- -5'
25735 5' -59.6 NC_005337.1 + 17014 0.69 0.543248
Target:  5'- gGGCCUCGACGuccagcgcGCaCUGCGUC-GCGu- -3'
miRNA:   3'- gCCGGAGUUGC--------CG-GACGCAGuCGCug -5'
25735 5' -59.6 NC_005337.1 + 19617 0.68 0.603041
Target:  5'- gCGGCCUCGA-GGCCcGCGUUcaccggGGgGAUc -3'
miRNA:   3'- -GCCGGAGUUgCCGGaCGCAG------UCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.