miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25744 5' -64.3 NC_005337.1 + 118176 0.66 0.482247
Target:  5'- cCGCGGCGgAccCGUUCgAGCUcgcGCCGGu -3'
miRNA:   3'- -GCGCCGCgUccGCGAGgUCGA---CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 97695 0.66 0.519058
Target:  5'- aCGCcGCGCuGGCGgaCCGGCUagGUgCGGa -3'
miRNA:   3'- -GCGcCGCGuCCGCgaGGUCGA--CG-GCC- -5'
25744 5' -64.3 NC_005337.1 + 97070 0.66 0.519058
Target:  5'- gCGCGGCGCGcGGUGgUCUGcgugcccaaccGCaUGCUGGu -3'
miRNA:   3'- -GCGCCGCGU-CCGCgAGGU-----------CG-ACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 104673 0.66 0.508818
Target:  5'- gCGCuGcCGCGGGCGCaagaccaagcucaUCCGGCagGCCa- -3'
miRNA:   3'- -GCGcC-GCGUCCGCG-------------AGGUCGa-CGGcc -5'
25744 5' -64.3 NC_005337.1 + 111265 0.66 0.528437
Target:  5'- aCGCGGCGCAaGUGC-CgCAGCaUGCuCGc -3'
miRNA:   3'- -GCGCCGCGUcCGCGaG-GUCG-ACG-GCc -5'
25744 5' -64.3 NC_005337.1 + 95462 0.66 0.509745
Target:  5'- gCGCGGCGUAGcgccccguGCGCagCCAGUccaUGCacuCGGg -3'
miRNA:   3'- -GCGCCGCGUC--------CGCGa-GGUCG---ACG---GCC- -5'
25744 5' -64.3 NC_005337.1 + 122342 0.66 0.519058
Target:  5'- uCGaCGGCGC--GCGC-CCGGgUGCCGc -3'
miRNA:   3'- -GC-GCCGCGucCGCGaGGUCgACGGCc -5'
25744 5' -64.3 NC_005337.1 + 91513 0.66 0.509745
Target:  5'- gGCGGCGUcgaagcGGGCGCgagaGGC-GUCGGu -3'
miRNA:   3'- gCGCCGCG------UCCGCGagg-UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 78980 0.66 0.500503
Target:  5'- uGCGGUGCGuGGCGCggcuguaggccCCGGUgaUGgCGGa -3'
miRNA:   3'- gCGCCGCGU-CCGCGa----------GGUCG--ACgGCC- -5'
25744 5' -64.3 NC_005337.1 + 97175 0.66 0.482247
Target:  5'- -uCGGCGCugcuGCGCUCCGGCgaGCuCGa -3'
miRNA:   3'- gcGCCGCGuc--CGCGAGGUCGa-CG-GCc -5'
25744 5' -64.3 NC_005337.1 + 53679 0.66 0.482247
Target:  5'- gGCGGcCGCAaggaggccGCGCUgaAGCUGCCGc -3'
miRNA:   3'- gCGCC-GCGUc-------CGCGAggUCGACGGCc -5'
25744 5' -64.3 NC_005337.1 + 99022 0.66 0.491336
Target:  5'- gCGCGGCcuGCgAGGCGCUggacgCCAGgUacGCCGa -3'
miRNA:   3'- -GCGCCG--CG-UCCGCGA-----GGUCgA--CGGCc -5'
25744 5' -64.3 NC_005337.1 + 122207 0.66 0.491336
Target:  5'- cCGCgGGCGCGGaCGUgUCGGCgcgcacGCCGGa -3'
miRNA:   3'- -GCG-CCGCGUCcGCGaGGUCGa-----CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 118121 0.66 0.509745
Target:  5'- aCGCGGCGCGaGCGCUacuucgacgUguGCggUGCCGc -3'
miRNA:   3'- -GCGCCGCGUcCGCGA---------GguCG--ACGGCc -5'
25744 5' -64.3 NC_005337.1 + 69944 0.66 0.509745
Target:  5'- cCGCGGCGCca-CGCUCCGcguggugggcacGCgcaagacGCCGGa -3'
miRNA:   3'- -GCGCCGCGuccGCGAGGU------------CGa------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 55984 0.66 0.500503
Target:  5'- uCGUGGCuauGCGGGCGa-CCucGCUGgCGGg -3'
miRNA:   3'- -GCGCCG---CGUCCGCgaGGu-CGACgGCC- -5'
25744 5' -64.3 NC_005337.1 + 90926 0.66 0.519058
Target:  5'- aGCGGCGUcuucccGGCGg-CCAGCgcGUCGGc -3'
miRNA:   3'- gCGCCGCGu-----CCGCgaGGUCGa-CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 52100 0.66 0.491336
Target:  5'- gGCGGCcgcguGCAGGUGCgcgacgggCCGGCcaugGCCu- -3'
miRNA:   3'- gCGCCG-----CGUCCGCGa-------GGUCGa---CGGcc -5'
25744 5' -64.3 NC_005337.1 + 115432 0.66 0.519058
Target:  5'- uGCGGCGCGugcuGGCGauagagCCGGCguacgacgcGCUGGc -3'
miRNA:   3'- gCGCCGCGU----CCGCga----GGUCGa--------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 18976 0.66 0.509745
Target:  5'- aGCGGCGCGuGUaCUCCuccgcgAGCUcggGCCGGu -3'
miRNA:   3'- gCGCCGCGUcCGcGAGG------UCGA---CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.