miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25744 5' -64.3 NC_005337.1 + 64247 0.72 0.234263
Target:  5'- uGCGGCGCugcGGCgGCUCUgggacccgGGCgcGCCGGa -3'
miRNA:   3'- gCGCCGCGu--CCG-CGAGG--------UCGa-CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 133727 0.75 0.138291
Target:  5'- gCGCGGCGguGGCGgaguggcgCCGGCaGCUGGa -3'
miRNA:   3'- -GCGCCGCguCCGCga------GGUCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 1317 0.73 0.185092
Target:  5'- gGCGGCGCAGGaGgUCCAGCgcGCUGc -3'
miRNA:   3'- gCGCCGCGUCCgCgAGGUCGa-CGGCc -5'
25744 5' -64.3 NC_005337.1 + 26723 0.73 0.187766
Target:  5'- cCGCGGCGUugccguccuugucGGUGCUCCGGUcGCCGc -3'
miRNA:   3'- -GCGCCGCGu------------CCGCGAGGUCGaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 46324 0.73 0.198803
Target:  5'- uGCaGGCGCAGGaGgUCCgGGCUGCCGc -3'
miRNA:   3'- gCG-CCGCGUCCgCgAGG-UCGACGGCc -5'
25744 5' -64.3 NC_005337.1 + 117908 0.73 0.203567
Target:  5'- gGCGGCGCuGGUGCUCgagGGC-GCCGa -3'
miRNA:   3'- gCGCCGCGuCCGCGAGg--UCGaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 20136 0.73 0.203567
Target:  5'- gGuCGGCGaAGGCGCgcUCCAcGCUGCCGc -3'
miRNA:   3'- gC-GCCGCgUCCGCG--AGGU-CGACGGCc -5'
25744 5' -64.3 NC_005337.1 + 26401 0.72 0.213391
Target:  5'- uGCGGCaGCAGGUacguGCUCgCGGCgGCCGc -3'
miRNA:   3'- gCGCCG-CGUCCG----CGAG-GUCGaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 129306 0.72 0.22362
Target:  5'- uGUGGgGCGcGCGCUCCGGCaacuccccguUGUCGGa -3'
miRNA:   3'- gCGCCgCGUcCGCGAGGUCG----------ACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 7466 0.75 0.137273
Target:  5'- cCGUGGCGacgaGGGCGCgcacgacguccaggUCCacggGGCUGCCGGu -3'
miRNA:   3'- -GCGCCGCg---UCCGCG--------------AGG----UCGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 29192 0.75 0.134925
Target:  5'- gGCGGCGCccgugccgaaggAGGCGCUgCgCAGCgccgcgcgGCCGGg -3'
miRNA:   3'- gCGCCGCG------------UCCGCGA-G-GUCGa-------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 74954 0.76 0.121896
Target:  5'- uGCGGUGCuGGgGCUCCgcggcuacgcgauAGCgGCCGGg -3'
miRNA:   3'- gCGCCGCGuCCgCGAGG-------------UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 67741 0.83 0.038697
Target:  5'- gGCGGCGCGGcGCGCagcUCCAGCgucucgGCCGGc -3'
miRNA:   3'- gCGCCGCGUC-CGCG---AGGUCGa-----CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 49536 0.82 0.047632
Target:  5'- gCGCGcGCGCGGGagaccaGCUCCGGC-GCCGGg -3'
miRNA:   3'- -GCGC-CGCGUCCg-----CGAGGUCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 99297 0.81 0.052825
Target:  5'- gCGCGGCGC-GGCGUUCCgcAGC-GCCGGg -3'
miRNA:   3'- -GCGCCGCGuCCGCGAGG--UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 77231 0.8 0.063266
Target:  5'- uGCGGCGUAGuacGCGC-CCAGCaGCCGGa -3'
miRNA:   3'- gCGCCGCGUC---CGCGaGGUCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 46365 0.79 0.077641
Target:  5'- gCGcCGGCGCAGGCGCgCCAGCgcgucaGCCaGGu -3'
miRNA:   3'- -GC-GCCGCGUCCGCGaGGUCGa-----CGG-CC- -5'
25744 5' -64.3 NC_005337.1 + 29734 0.79 0.079645
Target:  5'- gCGCGGUGUugcGGCGgaCCAGCggGCCGGg -3'
miRNA:   3'- -GCGCCGCGu--CCGCgaGGUCGa-CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 30083 0.77 0.10258
Target:  5'- gCGCaGGUGCAGGCGUccUCCAGCUcGCagaGGg -3'
miRNA:   3'- -GCG-CCGCGUCCGCG--AGGUCGA-CGg--CC- -5'
25744 5' -64.3 NC_005337.1 + 83334 0.77 0.10519
Target:  5'- gCGCGGCGCgAGGCGCcCCGGgagGCCGa -3'
miRNA:   3'- -GCGCCGCG-UCCGCGaGGUCga-CGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.