miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25744 5' -64.3 NC_005337.1 + 523 1.08 0.000521
Target:  5'- uCGCGGCGCAGGCGCUCCAGCUGCCGGc -3'
miRNA:   3'- -GCGCCGCGUCCGCGAGGUCGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 523 1.08 0.000521
Target:  5'- uCGCGGCGCAGGCGCUCCAGCUGCCGGc -3'
miRNA:   3'- -GCGCCGCGUCCGCGAGGUCGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 827 0.69 0.32376
Target:  5'- cCGCGcGCGCGGGCccggGCUCgacgaaggcggcgggCAGCgcgggcgcgGCCGGg -3'
miRNA:   3'- -GCGC-CGCGUCCG----CGAG---------------GUCGa--------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 827 0.69 0.32376
Target:  5'- cCGCGcGCGCGGGCccggGCUCgacgaaggcggcgggCAGCgcgggcgcgGCCGGg -3'
miRNA:   3'- -GCGC-CGCGUCCG----CGAG---------------GUCGa--------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 1317 0.73 0.185092
Target:  5'- gGCGGCGCAGGaGgUCCAGCgcGCUGc -3'
miRNA:   3'- gCGCCGCGUCCgCgAGGUCGa-CGGCc -5'
25744 5' -64.3 NC_005337.1 + 1972 0.67 0.446746
Target:  5'- aGCGaGCaGCcGGacgaGCUCCAGCUcgcGUCGGa -3'
miRNA:   3'- gCGC-CG-CGuCCg---CGAGGUCGA---CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 2202 0.69 0.335143
Target:  5'- gGCGGaCGCGGGCGCggcCCGG--GCCGc -3'
miRNA:   3'- gCGCC-GCGUCCGCGa--GGUCgaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 2622 0.69 0.340214
Target:  5'- gCGCGGCGCGcacGG-GCUCCucgaagcggaagguGGC-GCCGGc -3'
miRNA:   3'- -GCGCCGCGU---CCgCGAGG--------------UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 3619 0.69 0.334423
Target:  5'- uCGCGGuCGCAGGgcaccugUGCgUCCAGC-GCCGcGg -3'
miRNA:   3'- -GCGCC-GCGUCC-------GCG-AGGUCGaCGGC-C- -5'
25744 5' -64.3 NC_005337.1 + 6704 0.67 0.473241
Target:  5'- gGCuGCGCccGC-CUCCAGCagcaGCCGGa -3'
miRNA:   3'- gCGcCGCGucCGcGAGGUCGa---CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 7466 0.75 0.137273
Target:  5'- cCGUGGCGacgaGGGCGCgcacgacguccaggUCCacggGGCUGCCGGu -3'
miRNA:   3'- -GCGCCGCg---UCCGCG--------------AGG----UCGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 9638 0.66 0.527496
Target:  5'- gGUGGCGUaccucgucuccggAGGCGCgcaaugccUCCAGC-GCCa- -3'
miRNA:   3'- gCGCCGCG-------------UCCGCG--------AGGUCGaCGGcc -5'
25744 5' -64.3 NC_005337.1 + 9730 0.68 0.40532
Target:  5'- aGCGGggaggagagccugaaGCAGcGCGCgucggCCGGC-GCCGGg -3'
miRNA:   3'- gCGCCg--------------CGUC-CGCGa----GGUCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 10155 0.7 0.281132
Target:  5'- -uCGGa-CAGGCGCgUCCAGCccuUGCCGGc -3'
miRNA:   3'- gcGCCgcGUCCGCG-AGGUCG---ACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 10278 0.67 0.446746
Target:  5'- gGCGGCGCGuucagcauGGCGCgcgcaUCGGC-GCCGu -3'
miRNA:   3'- gCGCCGCGU--------CCGCGa----GGUCGaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 10382 0.68 0.380393
Target:  5'- gGCGGCcacgcaGCuGGUGCUCgGGCUGUgGa -3'
miRNA:   3'- gCGCCG------CGuCCGCGAGgUCGACGgCc -5'
25744 5' -64.3 NC_005337.1 + 10441 0.7 0.314039
Target:  5'- gCGCGGCGguGcGCGCgUCguGC-GCCaGGa -3'
miRNA:   3'- -GCGCCGCguC-CGCG-AGguCGaCGG-CC- -5'
25744 5' -64.3 NC_005337.1 + 10700 0.7 0.290061
Target:  5'- gGCGGC-CAGGaGCUCgGGCUcguccuccgaccggcGCCGGa -3'
miRNA:   3'- gCGCCGcGUCCgCGAGgUCGA---------------CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 11646 0.75 0.148859
Target:  5'- uGCGGCGgugcucgcggaaCAGGCGCUCCAGCagGUCu- -3'
miRNA:   3'- gCGCCGC------------GUCCGCGAGGUCGa-CGGcc -5'
25744 5' -64.3 NC_005337.1 + 12713 0.68 0.372573
Target:  5'- cCGCGcGCGCGccGCGCUCgaggAGgUGCCGGa -3'
miRNA:   3'- -GCGC-CGCGUc-CGCGAGg---UCgACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.