miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 5' -55.5 NC_005337.1 + 6410 0.73 0.472792
Target:  5'- gUGCGUGGACAugcccguGAGGCAGAuGUGGa- -3'
miRNA:   3'- uGCGCGCCUGU-------CUCCGUCUuCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 830 0.67 0.842525
Target:  5'- cGCGCGCGGGCccGGGCucgacGAAGgcGg- -3'
miRNA:   3'- -UGCGCGCCUGucUCCGu----CUUCauCaa -5'
25747 5' -55.5 NC_005337.1 + 107646 0.66 0.858752
Target:  5'- aGCGCGUGGACGacGGCGGGuucaccGUGGa- -3'
miRNA:   3'- -UGCGCGCCUGUcuCCGUCUu-----CAUCaa -5'
25747 5' -55.5 NC_005337.1 + 1040 0.66 0.888563
Target:  5'- uGCGCGgGaGGCGGGcGGCGGGAGg---- -3'
miRNA:   3'- -UGCGCgC-CUGUCU-CCGUCUUCaucaa -5'
25747 5' -55.5 NC_005337.1 + 66626 0.71 0.616297
Target:  5'- aACGCcuuuCGGGCGGGcGGUGGGAGUGGUg -3'
miRNA:   3'- -UGCGc---GCCUGUCU-CCGUCUUCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 67524 0.71 0.626808
Target:  5'- cGCGCGUGcGGCGGuuGguGAAGUAGg- -3'
miRNA:   3'- -UGCGCGC-CUGUCucCguCUUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 31282 0.7 0.636271
Target:  5'- cGCGCuCGGGCacguccgAGGGGCAGAAGUAc-- -3'
miRNA:   3'- -UGCGcGCCUG-------UCUCCGUCUUCAUcaa -5'
25747 5' -55.5 NC_005337.1 + 71868 0.69 0.710294
Target:  5'- gACGCcaCGGGC-GAGGCGGcGGUGGUg -3'
miRNA:   3'- -UGCGc-GCCUGuCUCCGUCuUCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 79609 0.68 0.776954
Target:  5'- uCGCGCGaGcgcaggagcccgcaGCGGAuGCAGAGGUGGUUg -3'
miRNA:   3'- uGCGCGC-C--------------UGUCUcCGUCUUCAUCAA- -5'
25747 5' -55.5 NC_005337.1 + 16807 0.68 0.798573
Target:  5'- uGCGCGUcGGCGGAGGCguugcuguacAGAGGgcgGGUg -3'
miRNA:   3'- -UGCGCGcCUGUCUCCG----------UCUUCa--UCAa -5'
25747 5' -55.5 NC_005337.1 + 10895 0.68 0.78927
Target:  5'- gUGUGCGGggacgggguACAGGGGCGGggGcAGg- -3'
miRNA:   3'- uGCGCGCC---------UGUCUCCGUCuuCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 68638 0.68 0.770226
Target:  5'- -aGCGUGGcGgAGGGGCGGAucuuggGGUGGUUg -3'
miRNA:   3'- ugCGCGCC-UgUCUCCGUCU------UCAUCAA- -5'
25747 5' -55.5 NC_005337.1 + 19706 0.73 0.513127
Target:  5'- gUGUGCGGGCGGGGGCGGuAAGUc--- -3'
miRNA:   3'- uGCGCGCCUGUCUCCGUC-UUCAucaa -5'
25747 5' -55.5 NC_005337.1 + 5127 0.68 0.78927
Target:  5'- gUGCGCGGGugucuggugUGGAGGUAGAGGUGc-- -3'
miRNA:   3'- uGCGCGCCU---------GUCUCCGUCUUCAUcaa -5'
25747 5' -55.5 NC_005337.1 + 133724 0.73 0.513127
Target:  5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3'
miRNA:   3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 115144 0.68 0.760504
Target:  5'- gACGCGCGuGGCGGAGGCcugcguccgacAGAAGc---- -3'
miRNA:   3'- -UGCGCGC-CUGUCUCCG-----------UCUUCaucaa -5'
25747 5' -55.5 NC_005337.1 + 67550 0.68 0.78927
Target:  5'- gGCGUGUccGGGuuGAGGCGGAAGgcGUc -3'
miRNA:   3'- -UGCGCG--CCUguCUCCGUCUUCauCAa -5'
25747 5' -55.5 NC_005337.1 + 13654 0.67 0.850743
Target:  5'- gACGCGCGGGau-GGGCAuGAAGaAGUc -3'
miRNA:   3'- -UGCGCGCCUgucUCCGU-CUUCaUCAa -5'
25747 5' -55.5 NC_005337.1 + 29086 0.71 0.592185
Target:  5'- cGCGCGCGGaaaagguaggaaucGCAGAGGCugccgGGuAAGUAGg- -3'
miRNA:   3'- -UGCGCGCC--------------UGUCUCCG-----UC-UUCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 133464 0.71 0.626808
Target:  5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3'
miRNA:   3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.