miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 3' -53.9 NC_005337.1 + 7094 1.08 0.004981
Target:  5'- uCAUGUCGUACGCGUCAGACUCGCGGAc -3'
miRNA:   3'- -GUACAGCAUGCGCAGUCUGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 60806 0.8 0.290267
Target:  5'- gCAUGUUGUACGCGUUGGugUcgugcaCGCGGAu -3'
miRNA:   3'- -GUACAGCAUGCGCAGUCugA------GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 31429 0.78 0.39879
Target:  5'- gGUG-CGUGCGgaagcugcCGUCGGACUUGCGGAa -3'
miRNA:   3'- gUACaGCAUGC--------GCAGUCUGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 95246 0.76 0.471415
Target:  5'- cCGUGcacUCGUGCGCGcggCAGACgCGCGGGc -3'
miRNA:   3'- -GUAC---AGCAUGCGCa--GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 39933 0.75 0.530021
Target:  5'- gGUGUaCGUGCGCGgCGGGCgccucgCGCGGGc -3'
miRNA:   3'- gUACA-GCAUGCGCaGUCUGa-----GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 99626 0.74 0.570534
Target:  5'- --cGUCGUGCGCGUgcgggacaCGGACgugCGCGGc -3'
miRNA:   3'- guaCAGCAUGCGCA--------GUCUGa--GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 93485 0.7 0.792299
Target:  5'- --gGUgGUGCGCcUCGGAgaCGCGGAc -3'
miRNA:   3'- guaCAgCAUGCGcAGUCUgaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 85869 0.7 0.819203
Target:  5'- cCAUGUCGgGCGCGaUCGGGCaCaCGGAg -3'
miRNA:   3'- -GUACAGCaUGCGC-AGUCUGaGcGCCU- -5'
25750 3' -53.9 NC_005337.1 + 30243 0.7 0.827833
Target:  5'- ----cUGUGCGgGUCAGGCgcaggCGCGGGc -3'
miRNA:   3'- guacaGCAUGCgCAGUCUGa----GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 35746 0.7 0.827833
Target:  5'- gGUGUCGUACGCGcUGGGCgcgaccgggaUCGUGGc -3'
miRNA:   3'- gUACAGCAUGCGCaGUCUG----------AGCGCCu -5'
25750 3' -53.9 NC_005337.1 + 131345 0.7 0.827833
Target:  5'- --cGcCGUGCGCGUCGGcACUC-CGGc -3'
miRNA:   3'- guaCaGCAUGCGCAGUC-UGAGcGCCu -5'
25750 3' -53.9 NC_005337.1 + 18893 0.69 0.844537
Target:  5'- gCGUGUCGUacACGCGcUGGAgCgUCGCGGGc -3'
miRNA:   3'- -GUACAGCA--UGCGCaGUCU-G-AGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 132102 0.69 0.860449
Target:  5'- --cGcCGUGCGCGUCGGcGCcgugCGCGGc -3'
miRNA:   3'- guaCaGCAUGCGCAGUC-UGa---GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 88119 0.69 0.865821
Target:  5'- --gGUCGUcuuccggaagaaccGCcccaugGCGUCGGAgCUCGCGGAc -3'
miRNA:   3'- guaCAGCA--------------UG------CGCAGUCU-GAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 2564 0.69 0.875515
Target:  5'- --aGUCGUACaGCG-CGGACUCcaugGCGGc -3'
miRNA:   3'- guaCAGCAUG-CGCaGUCUGAG----CGCCu -5'
25750 3' -53.9 NC_005337.1 + 21416 0.68 0.882715
Target:  5'- --cGUCG-ACGUGggccgCGGccaGCUCGCGGAg -3'
miRNA:   3'- guaCAGCaUGCGCa----GUC---UGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 88251 0.68 0.895098
Target:  5'- --cGUCGUGCGUGccggcgcgccggCGGGCgcCGCGGAg -3'
miRNA:   3'- guaCAGCAUGCGCa-----------GUCUGa-GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 13063 0.68 0.896427
Target:  5'- cCGUGUCGcugcUGCGCG-CGGg--CGCGGAa -3'
miRNA:   3'- -GUACAGC----AUGCGCaGUCugaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 4724 0.68 0.90293
Target:  5'- aCAUcUCGUACGCGUCgAGaucacggacGCUCGCGc- -3'
miRNA:   3'- -GUAcAGCAUGCGCAG-UC---------UGAGCGCcu -5'
25750 3' -53.9 NC_005337.1 + 122381 0.68 0.909192
Target:  5'- gCAUGUgCGUGCGCGaggUCGuGCUgCGCGGc -3'
miRNA:   3'- -GUACA-GCAUGCGC---AGUcUGA-GCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.