miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 3' -53.9 NC_005337.1 + 7094 1.08 0.004981
Target:  5'- uCAUGUCGUACGCGUCAGACUCGCGGAc -3'
miRNA:   3'- -GUACAGCAUGCGCAGUCUGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 13063 0.68 0.896427
Target:  5'- cCGUGUCGcugcUGCGCG-CGGg--CGCGGAa -3'
miRNA:   3'- -GUACAGC----AUGCGCaGUCugaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 122381 0.68 0.909192
Target:  5'- gCAUGUgCGUGCGCGaggUCGuGCUgCGCGGc -3'
miRNA:   3'- -GUACA-GCAUGCGC---AGUcUGA-GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 88933 0.67 0.931808
Target:  5'- --cGUCGUcUGCGagcucgCGGACcgCGCGGAg -3'
miRNA:   3'- guaCAGCAuGCGCa-----GUCUGa-GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 97919 0.67 0.931808
Target:  5'- uGUGUCGcgaguCGCacUCGGACgCGCGGAc -3'
miRNA:   3'- gUACAGCau---GCGc-AGUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 95492 0.67 0.931808
Target:  5'- cCAUGcacUCGgGCGCGUCGGGCUccacCGCGc- -3'
miRNA:   3'- -GUAC---AGCaUGCGCAGUCUGA----GCGCcu -5'
25750 3' -53.9 NC_005337.1 + 110347 0.67 0.936848
Target:  5'- --cGUCGcGCGCGccugccgCGGGCgCGCGGGc -3'
miRNA:   3'- guaCAGCaUGCGCa------GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 29452 0.66 0.946199
Target:  5'- --cGUUGgGCGCGUCAGagcagagcaccaGC-CGCGGGa -3'
miRNA:   3'- guaCAGCaUGCGCAGUC------------UGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 130176 0.66 0.950512
Target:  5'- --gGcCGUGCGCG-CGGAgCaCGCGGAg -3'
miRNA:   3'- guaCaGCAUGCGCaGUCU-GaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 21416 0.68 0.882715
Target:  5'- --cGUCG-ACGUGggccgCGGccaGCUCGCGGAg -3'
miRNA:   3'- guaCAGCaUGCGCa----GUC---UGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 2564 0.69 0.875515
Target:  5'- --aGUCGUACaGCG-CGGACUCcaugGCGGc -3'
miRNA:   3'- guaCAGCAUG-CGCaGUCUGAG----CGCCu -5'
25750 3' -53.9 NC_005337.1 + 60806 0.8 0.290267
Target:  5'- gCAUGUUGUACGCGUUGGugUcgugcaCGCGGAu -3'
miRNA:   3'- -GUACAGCAUGCGCAGUCugA------GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 95246 0.76 0.471415
Target:  5'- cCGUGcacUCGUGCGCGcggCAGACgCGCGGGc -3'
miRNA:   3'- -GUAC---AGCAUGCGCa--GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 39933 0.75 0.530021
Target:  5'- gGUGUaCGUGCGCGgCGGGCgccucgCGCGGGc -3'
miRNA:   3'- gUACA-GCAUGCGCaGUCUGa-----GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 99626 0.74 0.570534
Target:  5'- --cGUCGUGCGCGUgcgggacaCGGACgugCGCGGc -3'
miRNA:   3'- guaCAGCAUGCGCA--------GUCUGa--GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 85869 0.7 0.819203
Target:  5'- cCAUGUCGgGCGCGaUCGGGCaCaCGGAg -3'
miRNA:   3'- -GUACAGCaUGCGC-AGUCUGaGcGCCU- -5'
25750 3' -53.9 NC_005337.1 + 30243 0.7 0.827833
Target:  5'- ----cUGUGCGgGUCAGGCgcaggCGCGGGc -3'
miRNA:   3'- guacaGCAUGCgCAGUCUGa----GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 18893 0.69 0.844537
Target:  5'- gCGUGUCGUacACGCGcUGGAgCgUCGCGGGc -3'
miRNA:   3'- -GUACAGCA--UGCGCaGUCU-G-AGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 132102 0.69 0.860449
Target:  5'- --cGcCGUGCGCGUCGGcGCcgugCGCGGc -3'
miRNA:   3'- guaCaGCAUGCGCAGUC-UGa---GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 25437 0.66 0.958431
Target:  5'- gCGUGUCGcccGCGCGcuUCGGcAC-CGUGGAc -3'
miRNA:   3'- -GUACAGCa--UGCGC--AGUC-UGaGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.