Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25750 | 3' | -53.9 | NC_005337.1 | + | 2564 | 0.69 | 0.875515 |
Target: 5'- --aGUCGUACaGCG-CGGACUCcaugGCGGc -3' miRNA: 3'- guaCAGCAUG-CGCaGUCUGAG----CGCCu -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 4724 | 0.68 | 0.90293 |
Target: 5'- aCAUcUCGUACGCGUCgAGaucacggacGCUCGCGc- -3' miRNA: 3'- -GUAcAGCAUGCGCAG-UC---------UGAGCGCcu -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 7094 | 1.08 | 0.004981 |
Target: 5'- uCAUGUCGUACGCGUCAGACUCGCGGAc -3' miRNA: 3'- -GUACAGCAUGCGCAGUCUGAGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 13063 | 0.68 | 0.896427 |
Target: 5'- cCGUGUCGcugcUGCGCG-CGGg--CGCGGAa -3' miRNA: 3'- -GUACAGC----AUGCGCaGUCugaGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 18893 | 0.69 | 0.844537 |
Target: 5'- gCGUGUCGUacACGCGcUGGAgCgUCGCGGGc -3' miRNA: 3'- -GUACAGCA--UGCGCaGUCU-G-AGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 21416 | 0.68 | 0.882715 |
Target: 5'- --cGUCG-ACGUGggccgCGGccaGCUCGCGGAg -3' miRNA: 3'- guaCAGCaUGCGCa----GUC---UGAGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 25437 | 0.66 | 0.958431 |
Target: 5'- gCGUGUCGcccGCGCGcuUCGGcAC-CGUGGAc -3' miRNA: 3'- -GUACAGCa--UGCGC--AGUC-UGaGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 29452 | 0.66 | 0.946199 |
Target: 5'- --cGUUGgGCGCGUCAGagcagagcaccaGC-CGCGGGa -3' miRNA: 3'- guaCAGCaUGCGCAGUC------------UGaGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 30243 | 0.7 | 0.827833 |
Target: 5'- ----cUGUGCGgGUCAGGCgcaggCGCGGGc -3' miRNA: 3'- guacaGCAUGCgCAGUCUGa----GCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 31429 | 0.78 | 0.39879 |
Target: 5'- gGUG-CGUGCGgaagcugcCGUCGGACUUGCGGAa -3' miRNA: 3'- gUACaGCAUGC--------GCAGUCUGAGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 32581 | 0.66 | 0.946199 |
Target: 5'- gAUGaaGUugGCGUaGGACUCGUacuGGAa -3' miRNA: 3'- gUACagCAugCGCAgUCUGAGCG---CCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 35746 | 0.7 | 0.827833 |
Target: 5'- gGUGUCGUACGCGcUGGGCgcgaccgggaUCGUGGc -3' miRNA: 3'- gUACAGCAUGCGCaGUCUG----------AGCGCCu -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 35852 | 0.67 | 0.936848 |
Target: 5'- ---uUCGUGCGCugcgggggCGGACgCGCGGAa -3' miRNA: 3'- guacAGCAUGCGca------GUCUGaGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 36285 | 0.67 | 0.915213 |
Target: 5'- -cUGcgCGaACGCGgccaCGGugUCGCGGAu -3' miRNA: 3'- guACa-GCaUGCGCa---GUCugAGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 39933 | 0.75 | 0.530021 |
Target: 5'- gGUGUaCGUGCGCGgCGGGCgccucgCGCGGGc -3' miRNA: 3'- gUACA-GCAUGCGCaGUCUGa-----GCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 41852 | 0.66 | 0.954589 |
Target: 5'- --cGUCGgGCGgGagCGGGCUCGUGGc -3' miRNA: 3'- guaCAGCaUGCgCa-GUCUGAGCGCCu -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 60806 | 0.8 | 0.290267 |
Target: 5'- gCAUGUUGUACGCGUUGGugUcgugcaCGCGGAu -3' miRNA: 3'- -GUACAGCAUGCGCAGUCugA------GCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 85869 | 0.7 | 0.819203 |
Target: 5'- cCAUGUCGgGCGCGaUCGGGCaCaCGGAg -3' miRNA: 3'- -GUACAGCaUGCGC-AGUCUGaGcGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 88119 | 0.69 | 0.865821 |
Target: 5'- --gGUCGUcuuccggaagaaccGCcccaugGCGUCGGAgCUCGCGGAc -3' miRNA: 3'- guaCAGCA--------------UG------CGCAGUCU-GAGCGCCU- -5' |
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25750 | 3' | -53.9 | NC_005337.1 | + | 88251 | 0.68 | 0.895098 |
Target: 5'- --cGUCGUGCGUGccggcgcgccggCGGGCgcCGCGGAg -3' miRNA: 3'- guaCAGCAUGCGCa-----------GUCUGa-GCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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