miRNA display CGI


Results 1 - 20 of 581 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 76008 0.66 0.624791
Target:  5'- cCGCCGUgCGC-CGGUacacgcggaagACCGcCGCGC-CGg -3'
miRNA:   3'- -GCGGCA-GCGcGCCG-----------UGGU-GCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 77788 0.66 0.615029
Target:  5'- aGuuGgggagCGCGUacGGCAgCACGCGCcCGu -3'
miRNA:   3'- gCggCa----GCGCG--CCGUgGUGCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 75834 0.66 0.613078
Target:  5'- uGCacugCGUCGCggcauaaacaggaGCGGCGCCGCcgcgaugGCGUACa -3'
miRNA:   3'- gCG----GCAGCG-------------CGCCGUGGUG-------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 95964 0.66 0.60528
Target:  5'- gGUCGUUGCGCu---CgACGCGCGCGc -3'
miRNA:   3'- gCGGCAGCGCGccguGgUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 89178 0.66 0.60528
Target:  5'- gCGCCGagGCGUcuauuacguagGGCACguCG-GCACGg -3'
miRNA:   3'- -GCGGCagCGCG-----------CCGUGguGCgCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 88503 0.66 0.60528
Target:  5'- uGCCGUcauggacagcgcCGCGCGGUACgaACGCGgGg- -3'
miRNA:   3'- gCGGCA------------GCGCGCCGUGg-UGCGCgUgc -5'
25792 3' -62.8 NC_005337.1 + 11738 0.66 0.60528
Target:  5'- gGCUGcagCGCGCGuCGCCGCGC-CAgGg -3'
miRNA:   3'- gCGGCa--GCGCGCcGUGGUGCGcGUgC- -5'
25792 3' -62.8 NC_005337.1 + 104297 0.66 0.604306
Target:  5'- gGCgGUCcgcgaggGCGCGGCGgCGCucuGCGUGCGu -3'
miRNA:   3'- gCGgCAG-------CGCGCCGUgGUG---CGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 71233 0.66 0.602358
Target:  5'- gGCUGUCGCGCaccucguacugcucGGUugCuuCGuCGCACa -3'
miRNA:   3'- gCGGCAGCGCG--------------CCGugGu-GC-GCGUGc -5'
25792 3' -62.8 NC_005337.1 + 1668 0.66 0.615029
Target:  5'- gGCgCGUCGCGaaccugaaccGCAgCCGCaGCGCGCGu -3'
miRNA:   3'- gCG-GCAGCGCgc--------CGU-GGUG-CGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 91380 0.66 0.615029
Target:  5'- aGCCG-CGCucgaagaccucgGCGGCGCCcCGCuccaGCACc -3'
miRNA:   3'- gCGGCaGCG------------CGCCGUGGuGCG----CGUGc -5'
25792 3' -62.8 NC_005337.1 + 108884 0.66 0.615029
Target:  5'- gGUCGUCGacgGCGGCGgCAgCGaGCGCGu -3'
miRNA:   3'- gCGGCAGCg--CGCCGUgGU-GCgCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 59015 0.66 0.628697
Target:  5'- uCGCUGgagugggugCGCGCGGCcuucaccgacuucgcGCCGCugGCGgACGa -3'
miRNA:   3'- -GCGGCa--------GCGCGCCG---------------UGGUG--CGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 4686 0.66 0.624791
Target:  5'- gGUCGcUCGCGCGG-ACUugaGCaGCACGg -3'
miRNA:   3'- gCGGC-AGCGCGCCgUGGug-CG-CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 69708 0.66 0.624791
Target:  5'- aGaCUGUCG-GUGGCgGCCACGCGguCc -3'
miRNA:   3'- gC-GGCAGCgCGCCG-UGGUGCGCguGc -5'
25792 3' -62.8 NC_005337.1 + 38971 0.66 0.623814
Target:  5'- gCGCCcgagUGCGCGuGCgucaccgGCCGgGCGCugGg -3'
miRNA:   3'- -GCGGca--GCGCGC-CG-------UGGUgCGCGugC- -5'
25792 3' -62.8 NC_005337.1 + 120441 0.66 0.623814
Target:  5'- aCGCCccccgaGUCccuGCGgGGCGCgcucgagCGCGCGCugGa -3'
miRNA:   3'- -GCGG------CAG---CGCgCCGUG-------GUGCGCGugC- -5'
25792 3' -62.8 NC_005337.1 + 52468 0.66 0.618933
Target:  5'- gCGCUGagC-CGCGGCGCCcgcgagagccggcucAUGCGCGCc -3'
miRNA:   3'- -GCGGCa-GcGCGCCGUGG---------------UGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 5480 0.66 0.617957
Target:  5'- aGCCGcacccgcccaugaUCGCGC-GCACCcgugcuaccagguucGCGCGCcgGCGg -3'
miRNA:   3'- gCGGC-------------AGCGCGcCGUGG---------------UGCGCG--UGC- -5'
25792 3' -62.8 NC_005337.1 + 112399 0.66 0.615029
Target:  5'- gCGCCGcgcaggcCGUGCGGUagGCCuggauCGCGgACGa -3'
miRNA:   3'- -GCGGCa------GCGCGCCG--UGGu----GCGCgUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.