miRNA display CGI


Results 1 - 20 of 581 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 28245 1.08 0.00084
Target:  5'- aCGCCGUCGCGCGGCACCACGCGCACGu -3'
miRNA:   3'- -GCGGCAGCGCGCCGUGGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 25093 0.86 0.03141
Target:  5'- aCGCCGagcuccgccCGCGCGGCGCgGCGCGCGCGg -3'
miRNA:   3'- -GCGGCa--------GCGCGCCGUGgUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 2168 0.83 0.055624
Target:  5'- uGCCG-CGCaCGGCGCCgACGCGCACGg -3'
miRNA:   3'- gCGGCaGCGcGCCGUGG-UGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 28504 0.82 0.06166
Target:  5'- gCGCgGUCGCGCGGCACUGCguggggcagGCGCACu -3'
miRNA:   3'- -GCGgCAGCGCGCCGUGGUG---------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 90363 0.8 0.081697
Target:  5'- gGCCGUuaCGCGCGGCcucuucccgGCCGCGCGUGCa -3'
miRNA:   3'- gCGGCA--GCGCGCCG---------UGGUGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 10873 0.79 0.092741
Target:  5'- uCGCCGagCGgGCGaGCACCACGUGUGCGg -3'
miRNA:   3'- -GCGGCa-GCgCGC-CGUGGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 75089 0.79 0.097543
Target:  5'- aGCCGUCGC-CGGUGCCcCGaCGCACGg -3'
miRNA:   3'- gCGGCAGCGcGCCGUGGuGC-GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 41309 0.79 0.097543
Target:  5'- gCGuuGUCcaGCGUGGCGuCCACGCGCACc -3'
miRNA:   3'- -GCggCAG--CGCGCCGU-GGUGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 33031 0.79 0.100032
Target:  5'- gCGCCGUCcaGCGCGaGCACgCGCGCGgACGc -3'
miRNA:   3'- -GCGGCAG--CGCGC-CGUG-GUGCGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 100685 0.79 0.100032
Target:  5'- gCGCCGcgCGCGCGGC-CgACGCGaCGCGg -3'
miRNA:   3'- -GCGGCa-GCGCGCCGuGgUGCGC-GUGC- -5'
25792 3' -62.8 NC_005337.1 + 21169 0.79 0.10258
Target:  5'- aCGCCGuucgUCGCGCGG-ACCuGCGCGCGCa -3'
miRNA:   3'- -GCGGC----AGCGCGCCgUGG-UGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 108971 0.79 0.10258
Target:  5'- gCGCCGgucgaCGCGCGGCccgcccGCCGUGCGCGCGa -3'
miRNA:   3'- -GCGGCa----GCGCGCCG------UGGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 110343 0.79 0.10519
Target:  5'- gCGgCGUCGCGCGcGCcuGCCGCGgGCGCGc -3'
miRNA:   3'- -GCgGCAGCGCGC-CG--UGGUGCgCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 132101 0.79 0.10519
Target:  5'- gCGCCGUgCGCGuCGGCGCCGUGCGCGg- -3'
miRNA:   3'- -GCGGCA-GCGC-GCCGUGGUGCGCGUgc -5'
25792 3' -62.8 NC_005337.1 + 57274 0.78 0.107861
Target:  5'- gGCCG-CGCGgGGC-CgGCGCGCGCGg -3'
miRNA:   3'- gCGGCaGCGCgCCGuGgUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 99375 0.78 0.113397
Target:  5'- aCGcCCGUggaCGCGCGGCACCACcugccggugcuGCGCACc -3'
miRNA:   3'- -GC-GGCA---GCGCGCCGUGGUG-----------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 111367 0.78 0.116263
Target:  5'- aCGCUGUCGCugaagagcucGCGGUGCCGCuCGCGCGg -3'
miRNA:   3'- -GCGGCAGCG----------CGCCGUGGUGcGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 105104 0.78 0.122199
Target:  5'- uGCgGUCGCGCGGCGCCGCGUuuuagGCuGCu -3'
miRNA:   3'- gCGgCAGCGCGCCGUGGUGCG-----CG-UGc -5'
25792 3' -62.8 NC_005337.1 + 106022 0.78 0.125272
Target:  5'- aCGCaCGUgCGCGUGGUGCCGCGCG-ACGg -3'
miRNA:   3'- -GCG-GCA-GCGCGCCGUGGUGCGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 98718 0.78 0.125272
Target:  5'- -uCCGcUCGCGCGGCGCCcuGCGCGUGCu -3'
miRNA:   3'- gcGGC-AGCGCGCCGUGG--UGCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.