miRNA display CGI


Results 1 - 20 of 581 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 11 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 11 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 72 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 72 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 125 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 125 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 186 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 186 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 247 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 247 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 308 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 308 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 369 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 369 0.71 0.335143
Target:  5'- gGCgGUCGUGCGG-ACgCACGgaCGCACGg -3'
miRNA:   3'- gCGgCAGCGCGCCgUG-GUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 565 0.67 0.509745
Target:  5'- gGCCG-CGCGUa-CGCCGCGgcCGCGCGg -3'
miRNA:   3'- gCGGCaGCGCGccGUGGUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 565 0.67 0.509745
Target:  5'- gGCCG-CGCGUa-CGCCGCGgcCGCGCGg -3'
miRNA:   3'- gCGGCaGCGCGccGUGGUGC--GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 686 0.73 0.245328
Target:  5'- gGCCcuugCGCGCGGaggcgaaGCuCGCGCGCACGc -3'
miRNA:   3'- gCGGca--GCGCGCCg------UG-GUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 686 0.73 0.245328
Target:  5'- gGCCcuugCGCGCGGaggcgaaGCuCGCGCGCACGc -3'
miRNA:   3'- gCGGca--GCGCGCCg------UG-GUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 737 0.66 0.595548
Target:  5'- aCGCgGgcgagaGCGCGGCGCC-CGCGgCcucgACGg -3'
miRNA:   3'- -GCGgCag----CGCGCCGUGGuGCGC-G----UGC- -5'
25792 3' -62.8 NC_005337.1 + 737 0.66 0.595548
Target:  5'- aCGCgGgcgagaGCGCGGCGCC-CGCGgCcucgACGg -3'
miRNA:   3'- -GCGgCag----CGCGCCGUGGuGCGC-G----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.