miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 132952 0.65 0.922265
Target:  5'- cGCCGCGGCCUCgugcacgugcaccUgGUGGuCGuGAC-Cg -3'
miRNA:   3'- -CGGUGCCGGAGa------------AgCAUCuGC-CUGaG- -5'
25794 3' -55.5 NC_005337.1 + 132521 0.69 0.799105
Target:  5'- uGCUGCaGCC-CUUCGUccGGGCGGGCc- -3'
miRNA:   3'- -CGGUGcCGGaGAAGCA--UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 131464 0.67 0.865725
Target:  5'- gGCCugGGCUUCUccUCGcacGCGGAguucCUCa -3'
miRNA:   3'- -CGGugCCGGAGA--AGCaucUGCCU----GAG- -5'
25794 3' -55.5 NC_005337.1 + 130642 0.67 0.883214
Target:  5'- gGCCGCGGCgCUggacgcacaggugccCUgcgaccgcgaGUGGGCGGACUg -3'
miRNA:   3'- -CGGUGCCG-GA---------------GAag--------CAUCUGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 118598 0.66 0.913061
Target:  5'- uUCAaGGCCUCcgUCGUGGACuGGAggaUCg -3'
miRNA:   3'- cGGUgCCGGAGa-AGCAUCUG-CCUg--AG- -5'
25794 3' -55.5 NC_005337.1 + 117086 0.66 0.900694
Target:  5'- aGCuCAUGGCCgcgCUgaagauguucUCGcAGACGGAC-Cg -3'
miRNA:   3'- -CG-GUGCCGGa--GA----------AGCaUCUGCCUGaG- -5'
25794 3' -55.5 NC_005337.1 + 114122 0.66 0.900694
Target:  5'- cGCCGCGGCCUgCggcagCGUGGAgCGcGcCUUc -3'
miRNA:   3'- -CGGUGCCGGA-Gaa---GCAUCU-GC-CuGAG- -5'
25794 3' -55.5 NC_005337.1 + 110746 0.71 0.650644
Target:  5'- gGCCAUGGCCcggaugagccucuUCUUCGagcccGGAUGGACa- -3'
miRNA:   3'- -CGGUGCCGG-------------AGAAGCa----UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 110245 0.68 0.808054
Target:  5'- cGCCG-GGCgugaUCUUCGUGGuuACGGACa- -3'
miRNA:   3'- -CGGUgCCGg---AGAAGCAUC--UGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 108412 0.71 0.672198
Target:  5'- aUCACGGCCaaCUcCGUGuACGGGCUCa -3'
miRNA:   3'- cGGUGCCGGa-GAaGCAUcUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 103074 0.67 0.858072
Target:  5'- -gCACGGCCgaCUUCGUGGA---GCUCa -3'
miRNA:   3'- cgGUGCCGGa-GAAGCAUCUgccUGAG- -5'
25794 3' -55.5 NC_005337.1 + 101003 0.68 0.833062
Target:  5'- cGCCACgcucgcgGGCCUCUggaUGgcG-UGGACUCg -3'
miRNA:   3'- -CGGUG-------CCGGAGAa--GCauCuGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 100453 0.8 0.234714
Target:  5'- -aCACGGCC-CUUCGc-GACGGACUCa -3'
miRNA:   3'- cgGUGCCGGaGAAGCauCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 100313 0.67 0.873166
Target:  5'- gGCCcUGGCCgagagCUUCG-GGAUccuGGACUCc -3'
miRNA:   3'- -CGGuGCCGGa----GAAGCaUCUG---CCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 99709 0.67 0.858072
Target:  5'- uGCgCGCGGCCaUCgUCGcGGACaGGACg- -3'
miRNA:   3'- -CG-GUGCCGG-AGaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 99678 0.67 0.858072
Target:  5'- uCCGCGGCCUgggCGUGG-UGGACcCg -3'
miRNA:   3'- cGGUGCCGGAgaaGCAUCuGCCUGaG- -5'
25794 3' -55.5 NC_005337.1 + 99474 0.71 0.669126
Target:  5'- cGCgAgGGCgUCUUCGUGGccgugcggcgcuacGCGGACUg -3'
miRNA:   3'- -CGgUgCCGgAGAAGCAUC--------------UGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 98339 0.67 0.873166
Target:  5'- cGgCACGGaCUUCgucacgcaCGUGGACGGGCg- -3'
miRNA:   3'- -CgGUGCC-GGAGaa------GCAUCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 97618 0.74 0.519478
Target:  5'- gGCCGCGGCCU--UCGcGGACgGGACg- -3'
miRNA:   3'- -CGGUGCCGGAgaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 96135 0.66 0.896142
Target:  5'- uGCCGCGGCCggugagccggaacgCGUAGAUGG-Cg- -3'
miRNA:   3'- -CGGUGCCGGagaa----------GCAUCUGCCuGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.