Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25797 | 5' | -51.4 | NC_005337.1 | + | 33293 | 1.11 | 0.005533 |
Target: 5'- gCGACGAGCCAGACGAAGAAGACGAUCa -3' miRNA: 3'- -GCUGCUCGGUCUGCUUCUUCUGCUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 42984 | 0.82 | 0.330342 |
Target: 5'- gCGACGGGCCAGACGuugaacuuggcgGAGAGGAUGGccUCg -3' miRNA: 3'- -GCUGCUCGGUCUGC------------UUCUUCUGCU--AG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 34144 | 0.78 | 0.550234 |
Target: 5'- -cACGAGCaccacguuGGCGggGAAGGCGGUCa -3' miRNA: 3'- gcUGCUCGgu------CUGCuuCUUCUGCUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 36563 | 0.77 | 0.56995 |
Target: 5'- cCGGCGAGCCAccccaccGGCGAgaAGAAGACG-UCc -3' miRNA: 3'- -GCUGCUCGGU-------CUGCU--UCUUCUGCuAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 1250 | 0.77 | 0.570993 |
Target: 5'- aCGACGAGCCGGGCGAucagccgcaGGAuggcccgcggAGGCgGGUCg -3' miRNA: 3'- -GCUGCUCGGUCUGCU---------UCU----------UCUG-CUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 116963 | 0.77 | 0.581445 |
Target: 5'- aCGugGuGCUgcaGGACGAGGAGGGCGggCa -3' miRNA: 3'- -GCugCuCGG---UCUGCUUCUUCUGCuaG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 93305 | 0.76 | 0.623563 |
Target: 5'- gCGGuCGAGCUAGAUGAAGAAGugccggaaGAUCg -3' miRNA: 3'- -GCU-GCUCGGUCUGCUUCUUCug------CUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 34384 | 0.76 | 0.644696 |
Target: 5'- gCGGCGAGCCAGAgGAGcguGGCGGUg -3' miRNA: 3'- -GCUGCUCGGUCUgCUUcuuCUGCUAg -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 32106 | 0.75 | 0.665787 |
Target: 5'- uGACGuGCgAGGCGGAGAuGGACGAg- -3' miRNA: 3'- gCUGCuCGgUCUGCUUCU-UCUGCUag -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 84387 | 0.75 | 0.665787 |
Target: 5'- uCGcCGGGUucgCGGACGAGGAGGACGAg- -3' miRNA: 3'- -GCuGCUCG---GUCUGCUUCUUCUGCUag -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 6474 | 0.75 | 0.686762 |
Target: 5'- uGGCGGugaccagcGCgCGGACGAGGAGGuCGAUCg -3' miRNA: 3'- gCUGCU--------CG-GUCUGCUUCUUCuGCUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 35160 | 0.74 | 0.717836 |
Target: 5'- gCGACGAGCCGGcucGCGAGGcuaucGACGAg- -3' miRNA: 3'- -GCUGCUCGGUC---UGCUUCuu---CUGCUag -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 59101 | 0.74 | 0.748207 |
Target: 5'- gGACGcgcGCgAGGCGAcGAGGGCGGUCc -3' miRNA: 3'- gCUGCu--CGgUCUGCUuCUUCUGCUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 42278 | 0.74 | 0.748207 |
Target: 5'- uCGACGGGCUggagaagcucauGGGCGAcgAGGAGACGGa- -3' miRNA: 3'- -GCUGCUCGG------------UCUGCU--UCUUCUGCUag -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 63412 | 0.73 | 0.767928 |
Target: 5'- uGACGAGCUcGACGAAcuGGGCGAgUCa -3' miRNA: 3'- gCUGCUCGGuCUGCUUcuUCUGCU-AG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 92355 | 0.73 | 0.787134 |
Target: 5'- aCGACGAGgacgaGGACGAuGAGGACGAg- -3' miRNA: 3'- -GCUGCUCgg---UCUGCUuCUUCUGCUag -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 54454 | 0.73 | 0.787134 |
Target: 5'- uGugGucaucAGCCAGAUGAAGAacgaGGACGAccUCg -3' miRNA: 3'- gCugC-----UCGGUCUGCUUCU----UCUGCU--AG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 82455 | 0.73 | 0.805745 |
Target: 5'- gGACGAGCac-GCGggGuGGAUGAUCu -3' miRNA: 3'- gCUGCUCGgucUGCuuCuUCUGCUAG- -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 31194 | 0.72 | 0.823686 |
Target: 5'- cCGACGAGCCccaggugaccAGGCGGu--AGACGAUg -3' miRNA: 3'- -GCUGCUCGG----------UCUGCUucuUCUGCUAg -5' |
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25797 | 5' | -51.4 | NC_005337.1 | + | 71559 | 0.71 | 0.880214 |
Target: 5'- aGACGcaccGCCGGAUGAuGGAGACGcuGUCc -3' miRNA: 3'- gCUGCu---CGGUCUGCUuCUUCUGC--UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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