miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 5' -51.4 NC_005337.1 + 221 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 82455 0.73 0.805745
Target:  5'- gGACGAGCac-GCGggGuGGAUGAUCu -3'
miRNA:   3'- gCUGCUCGgucUGCuuCuUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 31194 0.72 0.823686
Target:  5'- cCGACGAGCCccaggugaccAGGCGGu--AGACGAUg -3'
miRNA:   3'- -GCUGCUCGG----------UCUGCUucuUCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 71559 0.71 0.880214
Target:  5'- aGACGcaccGCCGGAUGAuGGAGACGcuGUCc -3'
miRNA:   3'- gCUGCu---CGGUCUGCUuCUUCUGC--UAG- -5'
25797 5' -51.4 NC_005337.1 + 51138 0.7 0.906858
Target:  5'- cCGACGAG-CAGGCGAacucgucguacaaGGAGGugGGg- -3'
miRNA:   3'- -GCUGCUCgGUCUGCU-------------UCUUCugCUag -5'
25797 5' -51.4 NC_005337.1 + 88570 0.7 0.907492
Target:  5'- uGGCGGGCCGGggguuccggcucACGGAGAccAUGGUCg -3'
miRNA:   3'- gCUGCUCGGUC------------UGCUUCUucUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 46 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 99 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 160 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 92355 0.73 0.787134
Target:  5'- aCGACGAGgacgaGGACGAuGAGGACGAg- -3'
miRNA:   3'- -GCUGCUCgg---UCUGCUuCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 54454 0.73 0.787134
Target:  5'- uGugGucaucAGCCAGAUGAAGAacgaGGACGAccUCg -3'
miRNA:   3'- gCugC-----UCGGUCUGCUUCU----UCUGCU--AG- -5'
25797 5' -51.4 NC_005337.1 + 63412 0.73 0.767928
Target:  5'- uGACGAGCUcGACGAAcuGGGCGAgUCa -3'
miRNA:   3'- gCUGCUCGGuCUGCUUcuUCUGCU-AG- -5'
25797 5' -51.4 NC_005337.1 + 42984 0.82 0.330342
Target:  5'- gCGACGGGCCAGACGuugaacuuggcgGAGAGGAUGGccUCg -3'
miRNA:   3'- -GCUGCUCGGUCUGC------------UUCUUCUGCU--AG- -5'
25797 5' -51.4 NC_005337.1 + 36563 0.77 0.56995
Target:  5'- cCGGCGAGCCAccccaccGGCGAgaAGAAGACG-UCc -3'
miRNA:   3'- -GCUGCUCGGU-------CUGCU--UCUUCUGCuAG- -5'
25797 5' -51.4 NC_005337.1 + 1250 0.77 0.570993
Target:  5'- aCGACGAGCCGGGCGAucagccgcaGGAuggcccgcggAGGCgGGUCg -3'
miRNA:   3'- -GCUGCUCGGUCUGCU---------UCU----------UCUG-CUAG- -5'
25797 5' -51.4 NC_005337.1 + 93305 0.76 0.623563
Target:  5'- gCGGuCGAGCUAGAUGAAGAAGugccggaaGAUCg -3'
miRNA:   3'- -GCU-GCUCGGUCUGCUUCUUCug------CUAG- -5'
25797 5' -51.4 NC_005337.1 + 34384 0.76 0.644696
Target:  5'- gCGGCGAGCCAGAgGAGcguGGCGGUg -3'
miRNA:   3'- -GCUGCUCGGUCUgCUUcuuCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 84387 0.75 0.665787
Target:  5'- uCGcCGGGUucgCGGACGAGGAGGACGAg- -3'
miRNA:   3'- -GCuGCUCG---GUCUGCUUCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 6474 0.75 0.686762
Target:  5'- uGGCGGugaccagcGCgCGGACGAGGAGGuCGAUCg -3'
miRNA:   3'- gCUGCU--------CG-GUCUGCUUCUUCuGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 35160 0.74 0.717836
Target:  5'- gCGACGAGCCGGcucGCGAGGcuaucGACGAg- -3'
miRNA:   3'- -GCUGCUCGGUC---UGCUUCuu---CUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.