miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 5' -51.4 NC_005337.1 + 46 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 46 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 99 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 99 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 160 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 160 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 221 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 221 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 282 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 282 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 343 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 343 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 404 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 404 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 834 0.68 0.965274
Target:  5'- -cGCGGGCCcgggcucGACGAAGgcGGCGggCa -3'
miRNA:   3'- gcUGCUCGGu------CUGCUUCuuCUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 834 0.68 0.965274
Target:  5'- -cGCGGGCCcgggcucGACGAAGgcGGCGggCa -3'
miRNA:   3'- gcUGCUCGGu------CUGCUUCuuCUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 913 0.68 0.95417
Target:  5'- gCGACGAGCgCGG-CGgcGgcGGCGAg- -3'
miRNA:   3'- -GCUGCUCG-GUCuGCuuCuuCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 913 0.68 0.95417
Target:  5'- gCGACGAGCgCGG-CGgcGgcGGCGAg- -3'
miRNA:   3'- -GCUGCUCG-GUCuGCuuCuuCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 1250 0.77 0.570993
Target:  5'- aCGACGAGCCGGGCGAucagccgcaGGAuggcccgcggAGGCgGGUCg -3'
miRNA:   3'- -GCUGCUCGGUCUGCU---------UCU----------UCUG-CUAG- -5'
25797 5' -51.4 NC_005337.1 + 3011 0.69 0.940884
Target:  5'- aGACGAGCCGcACGAAGGAcucCGAg- -3'
miRNA:   3'- gCUGCUCGGUcUGCUUCUUcu-GCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.