Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25877 | 3' | -55 | NC_005337.1 | + | 721 | 0.72 | 0.639468 |
Target: 5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3' miRNA: 3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 68359 | 0.72 | 0.649768 |
Target: 5'- ---gCGCGGUCGCGAUcgcguggagcGAgGGCGGUGCg -3' miRNA: 3'- gaagGUGCCGGUGCUA----------CU-CUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 77473 | 0.72 | 0.649768 |
Target: 5'- -gUgCGCGGCgACGcgucccGGGGCGGUGCa -3' miRNA: 3'- gaAgGUGCCGgUGCua----CUCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 12078 | 0.72 | 0.649768 |
Target: 5'- -gUCCGCGcccGCgGCGAUGAGGCGcGgGCa -3' miRNA: 3'- gaAGGUGC---CGgUGCUACUCUGC-CaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 83996 | 0.72 | 0.660053 |
Target: 5'- -cUCCAUGGCgGaCGAgGAGGCGGggUGCu -3' miRNA: 3'- gaAGGUGCCGgU-GCUaCUCUGCC--ACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 35512 | 0.71 | 0.680548 |
Target: 5'- -gUCCACGGCgCugcCGGUGAcGA-GGUGCa -3' miRNA: 3'- gaAGGUGCCG-Gu--GCUACU-CUgCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 88213 | 0.71 | 0.680548 |
Target: 5'- -aUCCcCGGCCuccuCGAgGAGGCGG-GCu -3' miRNA: 3'- gaAGGuGCCGGu---GCUaCUCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 121038 | 0.71 | 0.700881 |
Target: 5'- -aUCCuGCGGuCCGCGGUGGGcCGGUa- -3' miRNA: 3'- gaAGG-UGCC-GGUGCUACUCuGCCAcg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 71320 | 0.71 | 0.700881 |
Target: 5'- -gUCgGCGGCgaccCGCGcgGcGGCGGUGCa -3' miRNA: 3'- gaAGgUGCCG----GUGCuaCuCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 36760 | 0.71 | 0.709959 |
Target: 5'- -cUCCACGGgCACGGUGugcacgcGGACcucGUGCg -3' miRNA: 3'- gaAGGUGCCgGUGCUAC-------UCUGc--CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 32544 | 0.71 | 0.710964 |
Target: 5'- ----uGCGGCgCACGGUGAGGauguccuugagcCGGUGCu -3' miRNA: 3'- gaaggUGCCG-GUGCUACUCU------------GCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 30275 | 0.71 | 0.719981 |
Target: 5'- -gUCCACGGCgCGCaGGUGAgcgccagGACGGccgGCa -3' miRNA: 3'- gaAGGUGCCG-GUG-CUACU-------CUGCCa--CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 91798 | 0.71 | 0.720979 |
Target: 5'- -cUCCACGGCgGCGGcgGuGGCGG-GUa -3' miRNA: 3'- gaAGGUGCCGgUGCUa-CuCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 105202 | 0.7 | 0.730917 |
Target: 5'- -gUCCGCGGCCugGGggccgcUGAGcugcgcgcucGCGG-GCg -3' miRNA: 3'- gaAGGUGCCGGugCU------ACUC----------UGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 40541 | 0.7 | 0.730917 |
Target: 5'- --gCCGCGGCgCGCGGUGGuGCGGUu- -3' miRNA: 3'- gaaGGUGCCG-GUGCUACUcUGCCAcg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 57533 | 0.7 | 0.736839 |
Target: 5'- uCUUCCugGGCCugGAccgcaugcacgggcUgcugcucuuccacGAGACGG-GCg -3' miRNA: 3'- -GAAGGugCCGGugCU--------------A-------------CUCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 109759 | 0.7 | 0.739787 |
Target: 5'- -gUCCGCGaggucguCCGCGGUGGGACGaccucgcGUGCg -3' miRNA: 3'- gaAGGUGCc------GGUGCUACUCUGC-------CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 83390 | 0.7 | 0.740768 |
Target: 5'- -gUUC-CGGCgCACGuUGuAGGCGGUGCu -3' miRNA: 3'- gaAGGuGCCG-GUGCuAC-UCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 68206 | 0.7 | 0.750523 |
Target: 5'- --gCCGCGGCCGCGuccgcGAuGCGGUcGCu -3' miRNA: 3'- gaaGGUGCCGGUGCua---CUcUGCCA-CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 90601 | 0.7 | 0.750523 |
Target: 5'- -gUCCGCccgGGCCACGAUuuccCGGUGCc -3' miRNA: 3'- gaAGGUG---CCGGUGCUAcucuGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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