miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 3' -55 NC_005337.1 + 71836 0.99 0.015574
Target:  5'- uCUUCCACGGCCACGAUGAGA-GGUGCc -3'
miRNA:   3'- -GAAGGUGCCGGUGCUACUCUgCCACG- -5'
25877 3' -55 NC_005337.1 + 42736 0.84 0.148338
Target:  5'- --gCCACGGCCGCGccGAGcguGCGGUGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCUC---UGCCACG- -5'
25877 3' -55 NC_005337.1 + 10721 0.8 0.245112
Target:  5'- -gUCCACGGCCauguggucaggGCGGUGGGAC-GUGCa -3'
miRNA:   3'- gaAGGUGCCGG-----------UGCUACUCUGcCACG- -5'
25877 3' -55 NC_005337.1 + 74930 0.8 0.276363
Target:  5'- cCUUCgcgcgCGCGGCCGCGcgGAuGCGGUGCu -3'
miRNA:   3'- -GAAG-----GUGCCGGUGCuaCUcUGCCACG- -5'
25877 3' -55 NC_005337.1 + 84885 0.79 0.310716
Target:  5'- gCUUacuCGGCCGCGG-GGGGCGGUGCg -3'
miRNA:   3'- -GAAgguGCCGGUGCUaCUCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 73818 0.79 0.310716
Target:  5'- aCUUCCGCGGCaacguCGcgGAGGCGGUcauGCg -3'
miRNA:   3'- -GAAGGUGCCGgu---GCuaCUCUGCCA---CG- -5'
25877 3' -55 NC_005337.1 + 20771 0.77 0.388852
Target:  5'- --gCCGCGGCCACGcgcuucgcgGGGACGG-GCg -3'
miRNA:   3'- gaaGGUGCCGGUGCua-------CUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 55628 0.76 0.405952
Target:  5'- aCUUCgACGGCgACGAggaauGGAUGGUGCu -3'
miRNA:   3'- -GAAGgUGCCGgUGCUac---UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 36673 0.75 0.450696
Target:  5'- --gCCGCGGCCaccguguccACGAUGAGcuuguucCGGUGCa -3'
miRNA:   3'- gaaGGUGCCGG---------UGCUACUCu------GCCACG- -5'
25877 3' -55 NC_005337.1 + 36293 0.75 0.478806
Target:  5'- ---aCGCGGCCACGGUGucgcGGAUGGcGCg -3'
miRNA:   3'- gaagGUGCCGGUGCUAC----UCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 97789 0.75 0.488366
Target:  5'- --gCCGCGGCCGCGGccAGGCcGUGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCUacUCUGcCACG- -5'
25877 3' -55 NC_005337.1 + 91177 0.75 0.492215
Target:  5'- -gUCCACGaacuucaucccgggcGCCGCGAUGcGGACGG-GCg -3'
miRNA:   3'- gaAGGUGC---------------CGGUGCUAC-UCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 88946 0.74 0.507749
Target:  5'- --cUCGCGGaCCGCGcgGAGGCGGaggGCg -3'
miRNA:   3'- gaaGGUGCC-GGUGCuaCUCUGCCa--CG- -5'
25877 3' -55 NC_005337.1 + 66080 0.73 0.567643
Target:  5'- ---aCGCGGCCGCGGcggcgGAGGCGcuGUGCg -3'
miRNA:   3'- gaagGUGCCGGUGCUa----CUCUGC--CACG- -5'
25877 3' -55 NC_005337.1 + 133704 0.73 0.608565
Target:  5'- gCUUCCgcGCGGCCGCGgcGuacgcgcGGCGGUGg -3'
miRNA:   3'- -GAAGG--UGCCGGUGCuaCu------CUGCCACg -5'
25877 3' -55 NC_005337.1 + 133704 0.73 0.608565
Target:  5'- gCUUCCgcGCGGCCGCGgcGuacgcgcGGCGGUGg -3'
miRNA:   3'- -GAAGG--UGCCGGUGCuaCu------CUGCCACg -5'
25877 3' -55 NC_005337.1 + 33063 0.72 0.629162
Target:  5'- -cUCCGCGaccuCCGCGAaGcAGGCGGUGCc -3'
miRNA:   3'- gaAGGUGCc---GGUGCUaC-UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 33409 0.72 0.639468
Target:  5'- -cUCUgGCGGCCGCcGUG-GAUGGUGCg -3'
miRNA:   3'- gaAGG-UGCCGGUGcUACuCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 721 0.72 0.639468
Target:  5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5'
25877 3' -55 NC_005337.1 + 39655 0.72 0.639468
Target:  5'- ---gCGCGGCCGCG-UGGGGCGcGUGg -3'
miRNA:   3'- gaagGUGCCGGUGCuACUCUGC-CACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.