Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25877 | 3' | -55 | NC_005337.1 | + | 90495 | 0.7 | 0.779117 |
Target: 5'- --aCCuuGGUCAgGAUgcgcGAGACGGUGUg -3' miRNA: 3'- gaaGGugCCGGUgCUA----CUCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 39655 | 0.72 | 0.639468 |
Target: 5'- ---gCGCGGCCGCG-UGGGGCGcGUGg -3' miRNA: 3'- gaagGUGCCGGUGCuACUCUGC-CACg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 68359 | 0.72 | 0.649768 |
Target: 5'- ---gCGCGGUCGCGAUcgcguggagcGAgGGCGGUGCg -3' miRNA: 3'- gaagGUGCCGGUGCUA----------CU-CUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 77473 | 0.72 | 0.649768 |
Target: 5'- -gUgCGCGGCgACGcgucccGGGGCGGUGCa -3' miRNA: 3'- gaAgGUGCCGgUGCua----CUCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 71320 | 0.71 | 0.700881 |
Target: 5'- -gUCgGCGGCgaccCGCGcgGcGGCGGUGCa -3' miRNA: 3'- gaAGgUGCCG----GUGCuaCuCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 121038 | 0.71 | 0.700881 |
Target: 5'- -aUCCuGCGGuCCGCGGUGGGcCGGUa- -3' miRNA: 3'- gaAGG-UGCC-GGUGCUACUCuGCCAcg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 36760 | 0.71 | 0.709959 |
Target: 5'- -cUCCACGGgCACGGUGugcacgcGGACcucGUGCg -3' miRNA: 3'- gaAGGUGCCgGUGCUAC-------UCUGc--CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 30275 | 0.71 | 0.719981 |
Target: 5'- -gUCCACGGCgCGCaGGUGAgcgccagGACGGccgGCa -3' miRNA: 3'- gaAGGUGCCG-GUG-CUACU-------CUGCCa--CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 40541 | 0.7 | 0.730917 |
Target: 5'- --gCCGCGGCgCGCGGUGGuGCGGUu- -3' miRNA: 3'- gaaGGUGCCG-GUGCUACUcUGCCAcg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 721 | 0.72 | 0.639468 |
Target: 5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3' miRNA: 3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 133704 | 0.73 | 0.608565 |
Target: 5'- gCUUCCgcGCGGCCGCGgcGuacgcgcGGCGGUGg -3' miRNA: 3'- -GAAGG--UGCCGGUGCuaCu------CUGCCACg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 66080 | 0.73 | 0.567643 |
Target: 5'- ---aCGCGGCCGCGGcggcgGAGGCGcuGUGCg -3' miRNA: 3'- gaagGUGCCGGUGCUa----CUCUGC--CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 42736 | 0.84 | 0.148338 |
Target: 5'- --gCCACGGCCGCGccGAGcguGCGGUGCg -3' miRNA: 3'- gaaGGUGCCGGUGCuaCUC---UGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 74930 | 0.8 | 0.276363 |
Target: 5'- cCUUCgcgcgCGCGGCCGCGcgGAuGCGGUGCu -3' miRNA: 3'- -GAAG-----GUGCCGGUGCuaCUcUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 84885 | 0.79 | 0.310716 |
Target: 5'- gCUUacuCGGCCGCGG-GGGGCGGUGCg -3' miRNA: 3'- -GAAgguGCCGGUGCUaCUCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 73818 | 0.79 | 0.310716 |
Target: 5'- aCUUCCGCGGCaacguCGcgGAGGCGGUcauGCg -3' miRNA: 3'- -GAAGGUGCCGgu---GCuaCUCUGCCA---CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 20771 | 0.77 | 0.388852 |
Target: 5'- --gCCGCGGCCACGcgcuucgcgGGGACGG-GCg -3' miRNA: 3'- gaaGGUGCCGGUGCua-------CUCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 55628 | 0.76 | 0.405952 |
Target: 5'- aCUUCgACGGCgACGAggaauGGAUGGUGCu -3' miRNA: 3'- -GAAGgUGCCGgUGCUac---UCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 91177 | 0.75 | 0.492215 |
Target: 5'- -gUCCACGaacuucaucccgggcGCCGCGAUGcGGACGG-GCg -3' miRNA: 3'- gaAGGUGC---------------CGGUGCUAC-UCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 88946 | 0.74 | 0.507749 |
Target: 5'- --cUCGCGGaCCGCGcgGAGGCGGaggGCg -3' miRNA: 3'- gaaGGUGCC-GGUGCuaCUCUGCCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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