Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25877 | 3' | -55 | NC_005337.1 | + | 61053 | 0.65 | 0.939004 |
Target: 5'- -cUCCugguggucCGGCCgAUGGuguUGAGcCGGUGCa -3' miRNA: 3'- gaAGGu-------GCCGG-UGCU---ACUCuGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 29051 | 0.65 | 0.939004 |
Target: 5'- --gCCACGccGCCAuaUGGUGAG-UGGUGUa -3' miRNA: 3'- gaaGGUGC--CGGU--GCUACUCuGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 577 | 0.65 | 0.939004 |
Target: 5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3' miRNA: 3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 28634 | 0.65 | 0.939004 |
Target: 5'- ---gCACGGUccggagCACGAgcccGACGGUGCa -3' miRNA: 3'- gaagGUGCCG------GUGCUacu-CUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 577 | 0.65 | 0.939004 |
Target: 5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3' miRNA: 3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 69274 | 0.65 | 0.939004 |
Target: 5'- gCUUCCACcccGCCGCGcgc-GACGG-GCa -3' miRNA: 3'- -GAAGGUGc--CGGUGCuacuCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 62402 | 0.65 | 0.939004 |
Target: 5'- -gUCCACGGUCGCa---AGcUGGUGCg -3' miRNA: 3'- gaAGGUGCCGGUGcuacUCuGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 99677 | 0.66 | 0.912084 |
Target: 5'- -gUCCGCGGCCugGgcGuGGUGGacccgGCg -3' miRNA: 3'- gaAGGUGCCGGugCuaCuCUGCCa----CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 82571 | 0.66 | 0.917376 |
Target: 5'- ---gCACGGCgcgCugGAUcuccaugGAGACGGUGUc -3' miRNA: 3'- gaagGUGCCG---GugCUA-------CUCUGCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 66320 | 0.66 | 0.912084 |
Target: 5'- --gCCGCGGUCGCGGgcuGGCGacacGUGCu -3' miRNA: 3'- gaaGGUGCCGGUGCUacuCUGC----CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 19063 | 0.66 | 0.917952 |
Target: 5'- gCUgugCCGCGGCCacagcaggugcgGCGAguugaaGAGGCGGacgccgGCg -3' miRNA: 3'- -GAa--GGUGCCGG------------UGCUa-----CUCUGCCa-----CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 6111 | 0.66 | 0.923578 |
Target: 5'- --gUCGCGGCCACG-UGcaGCGGcgUGCg -3' miRNA: 3'- gaaGGUGCCGGUGCuACucUGCC--ACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 72170 | 0.66 | 0.917952 |
Target: 5'- gUUCCuggaGGCCACGggGAa--GGUGUa -3' miRNA: 3'- gAAGGug--CCGGUGCuaCUcugCCACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 35337 | 0.66 | 0.928963 |
Target: 5'- --gCCugGGCCGuguuCGGUGAGucguCGGacgGCu -3' miRNA: 3'- gaaGGugCCGGU----GCUACUCu---GCCa--CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 15090 | 0.66 | 0.934105 |
Target: 5'- -gUCCAUGGCUgcgGCGGUGuuGCGGc-- -3' miRNA: 3'- gaAGGUGCCGG---UGCUACucUGCCacg -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 95012 | 0.66 | 0.933601 |
Target: 5'- ---gCGCGGCCaccgcgaACGgcGGGACGGcggGCa -3' miRNA: 3'- gaagGUGCCGG-------UGCuaCUCUGCCa--CG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 97619 | 0.66 | 0.912084 |
Target: 5'- --gCCGCGGCCuuCGcgGAcgggacguccaGACGcGUGCu -3' miRNA: 3'- gaaGGUGCCGGu-GCuaCU-----------CUGC-CACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 62641 | 0.66 | 0.928963 |
Target: 5'- -cUCCAUGGUgGCGAaGAGcagGCGGaUGUc -3' miRNA: 3'- gaAGGUGCCGgUGCUaCUC---UGCC-ACG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 80504 | 0.66 | 0.912084 |
Target: 5'- --cCCGCGGCCg----GGGGCGG-GCa -3' miRNA: 3'- gaaGGUGCCGGugcuaCUCUGCCaCG- -5' |
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25877 | 3' | -55 | NC_005337.1 | + | 51925 | 0.66 | 0.912084 |
Target: 5'- -gUCgGCGGCCACGcuccUGGacuuccuguuGGCGGUGg -3' miRNA: 3'- gaAGgUGCCGGUGCu---ACU----------CUGCCACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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