miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 3' -55 NC_005337.1 + 577 0.65 0.939004
Target:  5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5'
25877 3' -55 NC_005337.1 + 577 0.65 0.939004
Target:  5'- --gCCGCGGCCGCGcgGaAGcCGccgGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaC-UCuGCca-CG- -5'
25877 3' -55 NC_005337.1 + 721 0.72 0.639468
Target:  5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5'
25877 3' -55 NC_005337.1 + 721 0.72 0.639468
Target:  5'- --cCCGCGGCCGCGggGuacGCGG-GCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuaCuc-UGCCaCG- -5'
25877 3' -55 NC_005337.1 + 922 0.67 0.886235
Target:  5'- --gCgGCGGCgGCGgcGAGGCGGcggaGCg -3'
miRNA:   3'- gaaGgUGCCGgUGCuaCUCUGCCa---CG- -5'
25877 3' -55 NC_005337.1 + 922 0.67 0.886235
Target:  5'- --gCgGCGGCgGCGgcGAGGCGGcggaGCg -3'
miRNA:   3'- gaaGgUGCCGgUGCuaCUCUGCCa---CG- -5'
25877 3' -55 NC_005337.1 + 1269 0.67 0.893048
Target:  5'- --gCCGCaggauGGCC-CGcgGAGGCGGgucgGCg -3'
miRNA:   3'- gaaGGUG-----CCGGuGCuaCUCUGCCa---CG- -5'
25877 3' -55 NC_005337.1 + 2838 0.68 0.864448
Target:  5'- ---gCGCGGCCucCGcgGAGACGGaguccGCg -3'
miRNA:   3'- gaagGUGCCGGu-GCuaCUCUGCCa----CG- -5'
25877 3' -55 NC_005337.1 + 4210 0.67 0.905975
Target:  5'- aUUCCAgCGGCguCGGUGcaaaaGGUGCg -3'
miRNA:   3'- gAAGGU-GCCGguGCUACucug-CCACG- -5'
25877 3' -55 NC_005337.1 + 6063 0.7 0.779117
Target:  5'- --cCCGCGGCCACGA----GCGGcGCc -3'
miRNA:   3'- gaaGGUGCCGGUGCUacucUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 6111 0.66 0.923578
Target:  5'- --gUCGCGGCCACG-UGcaGCGGcgUGCg -3'
miRNA:   3'- gaaGGUGCCGGUGCuACucUGCC--ACG- -5'
25877 3' -55 NC_005337.1 + 9264 0.67 0.905975
Target:  5'- -gUCCACGcGCUcuAUGAggcUGuGGAUGGUGCu -3'
miRNA:   3'- gaAGGUGC-CGG--UGCU---AC-UCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 9520 0.7 0.779117
Target:  5'- --aCCauGCGGCCGgGG-GAGGCuGGUGCu -3'
miRNA:   3'- gaaGG--UGCCGGUgCUaCUCUG-CCACG- -5'
25877 3' -55 NC_005337.1 + 10430 0.67 0.886235
Target:  5'- -gUCCAUGcacGCCGCGAacgccGGGACGGaGCc -3'
miRNA:   3'- gaAGGUGC---CGGUGCUa----CUCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 10516 0.68 0.840754
Target:  5'- ---aCGCGGCCACGuugccgGuGGCGGaGCg -3'
miRNA:   3'- gaagGUGCCGGUGCua----CuCUGCCaCG- -5'
25877 3' -55 NC_005337.1 + 10721 0.8 0.245112
Target:  5'- -gUCCACGGCCauguggucaggGCGGUGGGAC-GUGCa -3'
miRNA:   3'- gaAGGUGCCGG-----------UGCUACUCUGcCACG- -5'
25877 3' -55 NC_005337.1 + 11629 0.68 0.87193
Target:  5'- -cUCgACGaGUCGCGucuUGcGGCGGUGCu -3'
miRNA:   3'- gaAGgUGC-CGGUGCu--ACuCUGCCACG- -5'
25877 3' -55 NC_005337.1 + 12078 0.72 0.649768
Target:  5'- -gUCCGCGcccGCgGCGAUGAGGCGcGgGCa -3'
miRNA:   3'- gaAGGUGC---CGgUGCUACUCUGC-CaCG- -5'
25877 3' -55 NC_005337.1 + 12711 0.66 0.923578
Target:  5'- -gUCCGCGcgcgcGCCGCGcucGAGGaGGUGCc -3'
miRNA:   3'- gaAGGUGC-----CGGUGCua-CUCUgCCACG- -5'
25877 3' -55 NC_005337.1 + 14053 0.67 0.893048
Target:  5'- -cUCCAUGGCgAucuUGA-GGGACaGGUGCu -3'
miRNA:   3'- gaAGGUGCCGgU---GCUaCUCUG-CCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.