miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 5' -52.6 NC_005337.1 + 88364 1.04 0.007933
Target:  5'- cUUCUUCGCGCGCAACAAGCGCAUGUAc -3'
miRNA:   3'- -AAGAAGCGCGCGUUGUUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 58159 0.79 0.309071
Target:  5'- -cCUUCGCGCGCAagcGCGuGCGCAUGa- -3'
miRNA:   3'- aaGAAGCGCGCGU---UGUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 104128 0.78 0.34853
Target:  5'- aUCUacccCGCGCGCGugGAGCGCGUGc- -3'
miRNA:   3'- aAGAa---GCGCGCGUugUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 58375 0.78 0.356841
Target:  5'- -aCUUCGCGCGCAACGucggcgGGCGCAcGUu -3'
miRNA:   3'- aaGAAGCGCGCGUUGU------UCGCGUaCAu -5'
25897 5' -52.6 NC_005337.1 + 68883 0.78 0.38172
Target:  5'- aUCUUCGCGCagcugGCcaagccgcucagcGACAAGCGCGUGUGc -3'
miRNA:   3'- aAGAAGCGCG-----CG-------------UUGUUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 56854 0.76 0.476824
Target:  5'- -gCUUCGUGCGCAuGCAccgccAGCGCAUGg- -3'
miRNA:   3'- aaGAAGCGCGCGU-UGU-----UCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 128313 0.76 0.476824
Target:  5'- gUCUgcUCGCGCGCGgcGCGAGCGCGa--- -3'
miRNA:   3'- aAGA--AGCGCGCGU--UGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 2499 0.75 0.507288
Target:  5'- ----aCGCGCGCAGC-AGCGUGUGUGc -3'
miRNA:   3'- aagaaGCGCGCGUUGuUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 99220 0.75 0.517626
Target:  5'- cUUCUUCGCGCGCAuaAAGCcCGUGUc -3'
miRNA:   3'- -AAGAAGCGCGCGUugUUCGcGUACAu -5'
25897 5' -52.6 NC_005337.1 + 36506 0.74 0.57044
Target:  5'- -cCUUCuCGCGCAGCGcGCGCGUGa- -3'
miRNA:   3'- aaGAAGcGCGCGUUGUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 25310 0.74 0.591958
Target:  5'- ----cCGCGCGuCGACcGGCGCGUGUAc -3'
miRNA:   3'- aagaaGCGCGC-GUUGuUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 55165 0.73 0.602771
Target:  5'- gUCUUCGUGCGCGucgACGAcGUGCcgGUGg -3'
miRNA:   3'- aAGAAGCGCGCGU---UGUU-CGCGuaCAU- -5'
25897 5' -52.6 NC_005337.1 + 45938 0.73 0.602771
Target:  5'- gUCUucUCGCGCGCGcCGGcGCGCGUGg- -3'
miRNA:   3'- aAGA--AGCGCGCGUuGUU-CGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 22314 0.73 0.624461
Target:  5'- ----aCGCGCGCAcgcucuACGAGCGCGUGc- -3'
miRNA:   3'- aagaaGCGCGCGU------UGUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 129530 0.73 0.646177
Target:  5'- ---cUCGCGCGCGgcGCGAGCGUccGUGa -3'
miRNA:   3'- aagaAGCGCGCGU--UGUUCGCGuaCAU- -5'
25897 5' -52.6 NC_005337.1 + 127879 0.73 0.657021
Target:  5'- gUCUgguggCGCGCGgcgcCGGCGAGCGCGUGc- -3'
miRNA:   3'- aAGAa----GCGCGC----GUUGUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 66112 0.72 0.663518
Target:  5'- gUCUgCGCGCGCGuggaguucaagucCAAGCGCGUGg- -3'
miRNA:   3'- aAGAaGCGCGCGUu------------GUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 24983 0.72 0.710699
Target:  5'- cUUCUUCG-GCuGCAACGcGCGCAUGg- -3'
miRNA:   3'- -AAGAAGCgCG-CGUUGUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 65999 0.71 0.752352
Target:  5'- ----cCGUGCGUcccgugGGCGAGCGCGUGUGg -3'
miRNA:   3'- aagaaGCGCGCG------UUGUUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 35029 0.71 0.752352
Target:  5'- gUCgcCGUcCGCGGCGAGCGCGUGg- -3'
miRNA:   3'- aAGaaGCGcGCGUUGUUCGCGUACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.