miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 5' -52.6 NC_005337.1 + 2094 0.66 0.936214
Target:  5'- gUCggCGCGCGCcGCGAGCccggucaggcacGCGUGc- -3'
miRNA:   3'- aAGaaGCGCGCGuUGUUCG------------CGUACau -5'
25897 5' -52.6 NC_005337.1 + 2499 0.75 0.507288
Target:  5'- ----aCGCGCGCAGC-AGCGUGUGUGc -3'
miRNA:   3'- aagaaGCGCGCGUUGuUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 3104 0.69 0.838057
Target:  5'- -cCUcCGCGCGCAucaGCAgcAGCaGCGUGUGc -3'
miRNA:   3'- aaGAaGCGCGCGU---UGU--UCG-CGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 3378 0.68 0.878771
Target:  5'- gUCgUUCGUGgGCGAgAAGCGCGcGUGc -3'
miRNA:   3'- aAG-AAGCGCgCGUUgUUCGCGUaCAU- -5'
25897 5' -52.6 NC_005337.1 + 4468 0.66 0.954824
Target:  5'- ---aUCGaCGCGCGGCAGGUGCu---- -3'
miRNA:   3'- aagaAGC-GCGCGUUGUUCGCGuacau -5'
25897 5' -52.6 NC_005337.1 + 4573 0.68 0.886197
Target:  5'- aUCUgcugccgCGgGCGCGGCGAcuGCGCGUGc- -3'
miRNA:   3'- aAGAa------GCgCGCGUUGUU--CGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 5399 0.68 0.886197
Target:  5'- gUCUggGUGCGCAGCAGcuGCGCAg--- -3'
miRNA:   3'- aAGAagCGCGCGUUGUU--CGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 6199 0.7 0.772506
Target:  5'- gUC-UCGgGCGCGGCGAcUGCAUGUGg -3'
miRNA:   3'- aAGaAGCgCGCGUUGUUcGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 11488 0.67 0.913333
Target:  5'- ----cCGCGCGCAGCAAcGCGUccAUGa- -3'
miRNA:   3'- aagaaGCGCGCGUUGUU-CGCG--UACau -5'
25897 5' -52.6 NC_005337.1 + 13814 0.66 0.950564
Target:  5'- aUCcagCGCGCGCu-CGAGCGCGc--- -3'
miRNA:   3'- aAGaa-GCGCGCGuuGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 14522 0.67 0.925312
Target:  5'- aUCUugcUCGCGUGCuGCuGGCGCAccaUGUc -3'
miRNA:   3'- aAGA---AGCGCGCGuUGuUCGCGU---ACAu -5'
25897 5' -52.6 NC_005337.1 + 22314 0.73 0.624461
Target:  5'- ----aCGCGCGCAcgcucuACGAGCGCGUGc- -3'
miRNA:   3'- aagaaGCGCGCGU------UGUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 23638 0.66 0.954824
Target:  5'- -gCUUCGCgGUGCugccCGAGCGCGaGUAc -3'
miRNA:   3'- aaGAAGCG-CGCGuu--GUUCGCGUaCAU- -5'
25897 5' -52.6 NC_005337.1 + 24983 0.72 0.710699
Target:  5'- cUUCUUCG-GCuGCAACGcGCGCAUGg- -3'
miRNA:   3'- -AAGAAGCgCG-CGUUGUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 25288 0.66 0.954824
Target:  5'- --gUUCGCGCGCAcgGCGGGCGg----- -3'
miRNA:   3'- aagAAGCGCGCGU--UGUUCGCguacau -5'
25897 5' -52.6 NC_005337.1 + 25310 0.74 0.591958
Target:  5'- ----cCGCGCGuCGACcGGCGCGUGUAc -3'
miRNA:   3'- aagaaGCGCGC-GUUGuUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 25349 0.7 0.782378
Target:  5'- gUCUUCGaCGCGCGGaagaaguGGCGCuGUGUGa -3'
miRNA:   3'- aAGAAGC-GCGCGUUgu-----UCGCG-UACAU- -5'
25897 5' -52.6 NC_005337.1 + 29535 0.66 0.954824
Target:  5'- gUCUUCGCGCGgCGGCc-GUGCAc--- -3'
miRNA:   3'- aAGAAGCGCGC-GUUGuuCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 29606 0.66 0.950564
Target:  5'- gUCUUgCGCcCGCGGC-AGCGCAcgGUGg -3'
miRNA:   3'- aAGAA-GCGcGCGUUGuUCGCGUa-CAU- -5'
25897 5' -52.6 NC_005337.1 + 30385 0.67 0.913333
Target:  5'- gUCcaugUCGCGCGCGGCcagcagcuGGCGCuUGUu -3'
miRNA:   3'- aAGa---AGCGCGCGUUGu-------UCGCGuACAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.