miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 5' -52.6 NC_005337.1 + 37765 0.68 0.878771
Target:  5'- -cCUUCuCGCGCAGCGAGgGCuUGa- -3'
miRNA:   3'- aaGAAGcGCGCGUUGUUCgCGuACau -5'
25897 5' -52.6 NC_005337.1 + 80671 0.69 0.829249
Target:  5'- aUCUgcgCgGCGCGCuuccGCGcGCGCAUGUGc -3'
miRNA:   3'- aAGAa--G-CGCGCGu---UGUuCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 99415 0.69 0.838057
Target:  5'- ----cCGCGgGCGGCGGGUGCGUGc- -3'
miRNA:   3'- aagaaGCGCgCGUUGUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 63954 0.69 0.846653
Target:  5'- gUCUUCGUGCGCGuGCAccGCGuCAUGg- -3'
miRNA:   3'- aAGAAGCGCGCGU-UGUu-CGC-GUACau -5'
25897 5' -52.6 NC_005337.1 + 94833 0.69 0.846653
Target:  5'- ---aUCGUGCGCAcCGAGCGCGg--- -3'
miRNA:   3'- aagaAGCGCGCGUuGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 61684 0.69 0.855031
Target:  5'- ----cCGCGCGCGACccggAGGCGUcgGUGu -3'
miRNA:   3'- aagaaGCGCGCGUUG----UUCGCGuaCAU- -5'
25897 5' -52.6 NC_005337.1 + 38311 0.68 0.871096
Target:  5'- ----gCGCGCGCGuCGAGCGCAa--- -3'
miRNA:   3'- aagaaGCGCGCGUuGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 68630 0.68 0.871096
Target:  5'- --gUUCgGCGCGCAGCuGAGCGCAc--- -3'
miRNA:   3'- aagAAG-CGCGCGUUG-UUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 70861 0.68 0.871096
Target:  5'- ----cCGCGCGCuguACGAGCGCGccaUGUc -3'
miRNA:   3'- aagaaGCGCGCGu--UGUUCGCGU---ACAu -5'
25897 5' -52.6 NC_005337.1 + 36626 0.7 0.801654
Target:  5'- ----gCGCGCGCGAcCGAGCGCAg--- -3'
miRNA:   3'- aagaaGCGCGCGUU-GUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 126425 0.7 0.800706
Target:  5'- -----gGCGCGCGACGGcgcgcguGCGCGUGUAc -3'
miRNA:   3'- aagaagCGCGCGUUGUU-------CGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 33656 0.71 0.762494
Target:  5'- cUCcUCGCGCGuCAugGcGCGCAUGa- -3'
miRNA:   3'- aAGaAGCGCGC-GUugUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 104128 0.78 0.34853
Target:  5'- aUCUacccCGCGCGCGugGAGCGCGUGc- -3'
miRNA:   3'- aAGAa---GCGCGCGUugUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 68883 0.78 0.38172
Target:  5'- aUCUUCGCGCagcugGCcaagccgcucagcGACAAGCGCGUGUGc -3'
miRNA:   3'- aAGAAGCGCG-----CG-------------UUGUUCGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 56854 0.76 0.476824
Target:  5'- -gCUUCGUGCGCAuGCAccgccAGCGCAUGg- -3'
miRNA:   3'- aaGAAGCGCGCGU-UGU-----UCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 128313 0.76 0.476824
Target:  5'- gUCUgcUCGCGCGCGgcGCGAGCGCGa--- -3'
miRNA:   3'- aAGA--AGCGCGCGU--UGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 22314 0.73 0.624461
Target:  5'- ----aCGCGCGCAcgcucuACGAGCGCGUGc- -3'
miRNA:   3'- aagaaGCGCGCGU------UGUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 129530 0.73 0.646177
Target:  5'- ---cUCGCGCGCGgcGCGAGCGUccGUGa -3'
miRNA:   3'- aagaAGCGCGCGU--UGUUCGCGuaCAU- -5'
25897 5' -52.6 NC_005337.1 + 66112 0.72 0.663518
Target:  5'- gUCUgCGCGCGCGuggaguucaagucCAAGCGCGUGg- -3'
miRNA:   3'- aAGAaGCGCGCGUu------------GUUCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 65999 0.71 0.752352
Target:  5'- ----cCGUGCGUcccgugGGCGAGCGCGUGUGg -3'
miRNA:   3'- aagaaGCGCGCG------UUGUUCGCGUACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.