miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 80263 0.75 0.231102
Target:  5'- gGCgACGUGCGCGUGCGCgaCGcGGUg -3'
miRNA:   3'- -CGgUGCGCGCGCACGCGgaGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 131335 0.75 0.236666
Target:  5'- cGCuCAUGCGCGcCGUGCGCgUCGGcacuccGGCg -3'
miRNA:   3'- -CG-GUGCGCGC-GCACGCGgAGCU------UCGa -5'
25902 3' -60.3 NC_005337.1 + 6116 0.75 0.236666
Target:  5'- gGCCACGUGCagcgGCGUGCGUC-CGAGcGCg -3'
miRNA:   3'- -CGGUGCGCG----CGCACGCGGaGCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 17125 0.75 0.242342
Target:  5'- uCCAUGCGCGCccGCGCCuugUCGAAGUUc -3'
miRNA:   3'- cGGUGCGCGCGcaCGCGG---AGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 2386 0.75 0.248131
Target:  5'- uCCACGUGCGCGccCGCCUCcagGAGGCa -3'
miRNA:   3'- cGGUGCGCGCGCacGCGGAG---CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 132189 0.74 0.259445
Target:  5'- cGCgGCGCGCGCcgacaccGUGCGCCUgcugcugcggcaCGggGCc -3'
miRNA:   3'- -CGgUGCGCGCG-------CACGCGGA------------GCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 35337 0.74 0.260052
Target:  5'- cCCAgGCGUGCGUgGCGCCgaagUGGAGCc -3'
miRNA:   3'- cGGUgCGCGCGCA-CGCGGa---GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 122373 0.74 0.266186
Target:  5'- cGCCACGCGCauguGCGUGCGCgaggUCGu-GCUg -3'
miRNA:   3'- -CGGUGCGCG----CGCACGCGg---AGCuuCGA- -5'
25902 3' -60.3 NC_005337.1 + 125550 0.74 0.278803
Target:  5'- aGCCccCGUGCGCGUGUGCa--GAAGCg -3'
miRNA:   3'- -CGGu-GCGCGCGCACGCGgagCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 12712 0.73 0.298615
Target:  5'- uCCGCGCGCGCGccGCGC-UCGAGGa- -3'
miRNA:   3'- cGGUGCGCGCGCa-CGCGgAGCUUCga -5'
25902 3' -60.3 NC_005337.1 + 23914 0.73 0.298615
Target:  5'- uGCCGCGCGCcCGcGCGCC-CGcGGCa -3'
miRNA:   3'- -CGGUGCGCGcGCaCGCGGaGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 2593 0.73 0.300655
Target:  5'- aGCCACGCGCGCGaagucgaagucguUcaGCGCggcgcgcacgggcucCUCGAAGCg -3'
miRNA:   3'- -CGGUGCGCGCGC-------------A--CGCG---------------GAGCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 86674 0.73 0.305457
Target:  5'- gGCCGCGCGCGCG-GCGUCgcccaCGcccAGCg -3'
miRNA:   3'- -CGGUGCGCGCGCaCGCGGa----GCu--UCGa -5'
25902 3' -60.3 NC_005337.1 + 24966 0.73 0.305457
Target:  5'- aCCGCGUGCGUgGUGCGCUUCuucGGCUg -3'
miRNA:   3'- cGGUGCGCGCG-CACGCGGAGcu-UCGA- -5'
25902 3' -60.3 NC_005337.1 + 132093 0.73 0.305457
Target:  5'- cGCCGCcuGCGC-CGUGCGCgUCGgcGCc -3'
miRNA:   3'- -CGGUG--CGCGcGCACGCGgAGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 9951 0.73 0.305457
Target:  5'- cGCCGCGUccaugaGCGCcUGCGCCgcgaCGAGGCc -3'
miRNA:   3'- -CGGUGCG------CGCGcACGCGGa---GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 50389 0.73 0.311017
Target:  5'- cGCCugGCGCGgGggcGCGCCgcgcgucggugaCGGAGCg -3'
miRNA:   3'- -CGGugCGCGCgCa--CGCGGa-----------GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 100686 0.73 0.312419
Target:  5'- cGCCGCGCGCGCGgccGaCGCgaCGcGGCg -3'
miRNA:   3'- -CGGUGCGCGCGCa--C-GCGgaGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 6897 0.73 0.312419
Target:  5'- uGUCGCGCGCGCGcggguccGCGCCggcgCGcAGCa -3'
miRNA:   3'- -CGGUGCGCGCGCa------CGCGGa---GCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 109899 0.73 0.312419
Target:  5'- cGCCACGUGCGCGUGgaagaCGUgUCGcguGGGCa -3'
miRNA:   3'- -CGGUGCGCGCGCAC-----GCGgAGC---UUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.