miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 91750 1.09 0.000982
Target:  5'- gGCCACGCGCGCGUGCGCCUCGAAGCUg -3'
miRNA:   3'- -CGGUGCGCGCGCACGCGGAGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 98882 0.83 0.070371
Target:  5'- cGCCGCGCGCGCGgacUGCGCgCUCG-AGCc -3'
miRNA:   3'- -CGGUGCGCGCGC---ACGCG-GAGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 104559 0.82 0.080225
Target:  5'- aCCGCGCGCGCGUgcGCGCCUCGc-GCg -3'
miRNA:   3'- cGGUGCGCGCGCA--CGCGGAGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 126213 0.81 0.09139
Target:  5'- cGCCACGCGCGaGUGCGUgaUGGAGCUg -3'
miRNA:   3'- -CGGUGCGCGCgCACGCGgaGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 91884 0.78 0.144914
Target:  5'- gGCCGCGCGcCGCG-GCGCCUCcGGGUc -3'
miRNA:   3'- -CGGUGCGC-GCGCaCGCGGAGcUUCGa -5'
25902 3' -60.3 NC_005337.1 + 42531 0.78 0.148605
Target:  5'- gGCgCACGCGCGCGUG-GCCg-GggGCUa -3'
miRNA:   3'- -CG-GUGCGCGCGCACgCGGagCuuCGA- -5'
25902 3' -60.3 NC_005337.1 + 78151 0.77 0.168376
Target:  5'- cGCCGCGCaCGCuggcgaugccGUGCGCCUCG-AGCa -3'
miRNA:   3'- -CGGUGCGcGCG----------CACGCGGAGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 133460 0.77 0.181341
Target:  5'- cCCGCGCGCGCGgacgGCuCCgCGGAGCUg -3'
miRNA:   3'- cGGUGCGCGCGCa---CGcGGaGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 133460 0.77 0.181341
Target:  5'- cCCGCGCGCGCGgacgGCuCCgCGGAGCUg -3'
miRNA:   3'- cGGUGCGCGCGCa---CGcGGaGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 126026 0.76 0.190469
Target:  5'- cCCGCGCGUGCGUGUGUCUCau-GCg -3'
miRNA:   3'- cGGUGCGCGCGCACGCGGAGcuuCGa -5'
25902 3' -60.3 NC_005337.1 + 109169 0.76 0.190469
Target:  5'- uCCGCGCGCGCc-GCGCCgcgcgggCGGAGCUc -3'
miRNA:   3'- cGGUGCGCGCGcaCGCGGa------GCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 109289 0.76 0.204917
Target:  5'- uCCAUGCGCGCGuUGCaGCCgaaGAAGCg -3'
miRNA:   3'- cGGUGCGCGCGC-ACG-CGGag-CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 34580 0.76 0.204917
Target:  5'- gGCCGCGCGCa---GCGCgUCGAAGCUg -3'
miRNA:   3'- -CGGUGCGCGcgcaCGCGgAGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 37221 0.76 0.20994
Target:  5'- cGCCGCGCGUGCGUG-GCgaUGAGGUg -3'
miRNA:   3'- -CGGUGCGCGCGCACgCGgaGCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 53657 0.76 0.21715
Target:  5'- cGCCACGCGCGCuucGCGgcgugcucgcuggacCCUUGAAGCg -3'
miRNA:   3'- -CGGUGCGCGCGca-CGC---------------GGAGCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 47610 0.75 0.220304
Target:  5'- cGCCGCGCGCGCGgccGCGCUga-AAGCc -3'
miRNA:   3'- -CGGUGCGCGCGCa--CGCGGagcUUCGa -5'
25902 3' -60.3 NC_005337.1 + 70256 0.75 0.220304
Target:  5'- cGCCACGCGCuGCGcgcUGUGCCg-GAAGCc -3'
miRNA:   3'- -CGGUGCGCG-CGC---ACGCGGagCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 33598 0.75 0.225648
Target:  5'- gGCCGCGCGCGCG-GCGCgaaCGcGGCg -3'
miRNA:   3'- -CGGUGCGCGCGCaCGCGga-GCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 39936 0.75 0.225648
Target:  5'- -gUACGUGCGCGgcggGCGCCUCGcgcGGGCg -3'
miRNA:   3'- cgGUGCGCGCGCa---CGCGGAGC---UUCGa -5'
25902 3' -60.3 NC_005337.1 + 65529 0.75 0.231102
Target:  5'- aCCugGUGCGCGUGCGCUcgaaaGAGGUg -3'
miRNA:   3'- cGGugCGCGCGCACGCGGag---CUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.