miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 45491 0.66 0.68192
Target:  5'- aGCCGCuucugguaCGCGCGgaccUGCGCCUCcGGGUc -3'
miRNA:   3'- -CGGUGc-------GCGCGC----ACGCGGAGcUUCGa -5'
25902 3' -60.3 NC_005337.1 + 90915 0.66 0.701696
Target:  5'- aGCaCACGCGCaGCG-GCGUCUUcccGGCg -3'
miRNA:   3'- -CG-GUGCGCG-CGCaCGCGGAGcu-UCGa -5'
25902 3' -60.3 NC_005337.1 + 133714 0.66 0.695784
Target:  5'- gGCCGCGgcguaCGCGCGgcgguggcggagugGCGCCggcagcUGGAGCg -3'
miRNA:   3'- -CGGUGC-----GCGCGCa-------------CGCGGa-----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 129525 0.66 0.670972
Target:  5'- cGCUgcuCGCGCGCG-GCGCgagcguccgugauCUCGAcGCg -3'
miRNA:   3'- -CGGu--GCGCGCGCaCGCG-------------GAGCUuCGa -5'
25902 3' -60.3 NC_005337.1 + 31431 0.66 0.682913
Target:  5'- uCCugGCGCGCGgcccgaccaugacgcGCGUCUUGuuGCc -3'
miRNA:   3'- cGGugCGCGCGCa--------------CGCGGAGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 27128 0.66 0.68192
Target:  5'- gGCCACGCGCagcaGCGUGa-CCUcCGGacacAGCg -3'
miRNA:   3'- -CGGUGCGCG----CGCACgcGGA-GCU----UCGa -5'
25902 3' -60.3 NC_005337.1 + 65233 0.66 0.671969
Target:  5'- gGCCAC-CGCccuGCGgcuCGCCUCGGAGaCg -3'
miRNA:   3'- -CGGUGcGCG---CGCac-GCGGAGCUUC-Ga -5'
25902 3' -60.3 NC_005337.1 + 101003 0.66 0.721247
Target:  5'- cGCCACGCuCGCG-G-GCCUCuGGauGGCg -3'
miRNA:   3'- -CGGUGCGcGCGCaCgCGGAG-CU--UCGa -5'
25902 3' -60.3 NC_005337.1 + 34800 0.66 0.665982
Target:  5'- cGCCAUcUGCGCGUcgcggguggccaGCGCCUCuaucucccgcaugauGggGCa -3'
miRNA:   3'- -CGGUGcGCGCGCA------------CGCGGAG---------------CuuCGa -5'
25902 3' -60.3 NC_005337.1 + 83978 0.66 0.671969
Target:  5'- gGCgGCGCGgGCGggcacgucUGgGCCUgcaCGggGCa -3'
miRNA:   3'- -CGgUGCGCgCGC--------ACgCGGA---GCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 66952 0.66 0.661986
Target:  5'- -aCGCGCGCGCGaucgagcGCGCCaUGGAccGCUa -3'
miRNA:   3'- cgGUGCGCGCGCa------CGCGGaGCUU--CGA- -5'
25902 3' -60.3 NC_005337.1 + 68918 0.66 0.690842
Target:  5'- -gCGCGUGUGCGUGUGCggcaUCGAcccguacccgcgcGGCg -3'
miRNA:   3'- cgGUGCGCGCGCACGCGg---AGCU-------------UCGa -5'
25902 3' -60.3 NC_005337.1 + 912 0.66 0.671969
Target:  5'- cGCgACGaGCGCGgcgGCGgCggCGAGGCg -3'
miRNA:   3'- -CGgUGCgCGCGCa--CGCgGa-GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 36616 0.66 0.68192
Target:  5'- gGCCuggaGCGCGCGcGCGaCCgagCGcAGCg -3'
miRNA:   3'- -CGGug--CGCGCGCaCGC-GGa--GCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 1409 0.66 0.701696
Target:  5'- uCCGCGUGUGCGUGUuuGUCUgGGucuGCg -3'
miRNA:   3'- cGGUGCGCGCGCACG--CGGAgCUu--CGa -5'
25902 3' -60.3 NC_005337.1 + 98842 0.66 0.661986
Target:  5'- cGCCcacCGCGC-CGUGCGCgUCcaucGAGCa -3'
miRNA:   3'- -CGGu--GCGCGcGCACGCGgAGc---UUCGa -5'
25902 3' -60.3 NC_005337.1 + 68732 0.66 0.691832
Target:  5'- cGCC-CGUGCuGCGcacagUGCGCCUCc-AGCa -3'
miRNA:   3'- -CGGuGCGCG-CGC-----ACGCGGAGcuUCGa -5'
25902 3' -60.3 NC_005337.1 + 25348 0.66 0.661986
Target:  5'- cGCCACGuCGCG-GcGCGUCUCGcuGGUg -3'
miRNA:   3'- -CGGUGC-GCGCgCaCGCGGAGCu-UCGa -5'
25902 3' -60.3 NC_005337.1 + 123301 0.66 0.661986
Target:  5'- cGCaCGCGCuGCGCGgaucGCGCCggccagUGuGGCUa -3'
miRNA:   3'- -CG-GUGCG-CGCGCa---CGCGGa-----GCuUCGA- -5'
25902 3' -60.3 NC_005337.1 + 104134 0.66 0.661986
Target:  5'- cCCGCGCGCGUGgaGCGCgUgcAGGCg -3'
miRNA:   3'- cGGUGCGCGCGCa-CGCGgAgcUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.