miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 576 0.66 0.701696
Target:  5'- cGCCGCGgcCGCGCGgaaGcCGCCggCGAAcGCc -3'
miRNA:   3'- -CGGUGC--GCGCGCa--C-GCGGa-GCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 576 0.66 0.701696
Target:  5'- cGCCGCGgcCGCGCGgaaGcCGCCggCGAAcGCc -3'
miRNA:   3'- -CGGUGC--GCGCGCa--C-GCGGa-GCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 774 0.7 0.475944
Target:  5'- gGCCAUGUGCuGCGcGcCGCCgacgaCGAGGCa -3'
miRNA:   3'- -CGGUGCGCG-CGCaC-GCGGa----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 774 0.7 0.475944
Target:  5'- gGCCAUGUGCuGCGcGcCGCCgacgaCGAGGCa -3'
miRNA:   3'- -CGGUGCGCG-CGCaC-GCGGa----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 826 0.69 0.494581
Target:  5'- uCCGCGCGCGCGgGCccgGgCUCGAcgaaGGCg -3'
miRNA:   3'- cGGUGCGCGCGCaCG---CgGAGCU----UCGa -5'
25902 3' -60.3 NC_005337.1 + 826 0.69 0.494581
Target:  5'- uCCGCGCGCGCGgGCccgGgCUCGAcgaaGGCg -3'
miRNA:   3'- cGGUGCGCGCGCaCG---CgGAGCU----UCGa -5'
25902 3' -60.3 NC_005337.1 + 912 0.66 0.671969
Target:  5'- cGCgACGaGCGCGgcgGCGgCggCGAGGCg -3'
miRNA:   3'- -CGgUGCgCGCGCa--CGCgGa-GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 912 0.66 0.671969
Target:  5'- cGCgACGaGCGCGgcgGCGgCggCGAGGCg -3'
miRNA:   3'- -CGgUGCgCGCGCa--CGCgGa-GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 991 0.7 0.475944
Target:  5'- cGCgGCGCGCggagggcggGCGU-CGCCUgGAGGCc -3'
miRNA:   3'- -CGgUGCGCG---------CGCAcGCGGAgCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 991 0.7 0.475944
Target:  5'- cGCgGCGCGCggagggcggGCGU-CGCCUgGAGGCc -3'
miRNA:   3'- -CGgUGCGCG---------CGCAcGCGGAgCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 1133 0.68 0.542519
Target:  5'- aGCaCGCGCGCgaccagcuccGCGgggagcGCGCCggCGGAGCg -3'
miRNA:   3'- -CG-GUGCGCG----------CGCa-----CGCGGa-GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 1209 0.67 0.64196
Target:  5'- gGCCACcgGCGcCGCGUaCGCggaCGAAGCUa -3'
miRNA:   3'- -CGGUG--CGC-GCGCAcGCGga-GCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 1409 0.66 0.701696
Target:  5'- uCCGCGUGUGCGUGUuuGUCUgGGucuGCg -3'
miRNA:   3'- cGGUGCGCGCGCACG--CGGAgCUu--CGa -5'
25902 3' -60.3 NC_005337.1 + 1675 0.66 0.701696
Target:  5'- cGCCGCGuCGuUGCG-GUGCCcgguggCGAAGUg -3'
miRNA:   3'- -CGGUGC-GC-GCGCaCGCGGa-----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 1691 0.67 0.64196
Target:  5'- aGCCGCaGCGCGCGU-CGCaacagCGAcacGGCc -3'
miRNA:   3'- -CGGUG-CGCGCGCAcGCGga---GCU---UCGa -5'
25902 3' -60.3 NC_005337.1 + 2386 0.75 0.248131
Target:  5'- uCCACGUGCGCGccCGCCUCcagGAGGCa -3'
miRNA:   3'- cGGUGCGCGCGCacGCGGAG---CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 2593 0.73 0.300655
Target:  5'- aGCCACGCGCGCGaagucgaagucguUcaGCGCggcgcgcacgggcucCUCGAAGCg -3'
miRNA:   3'- -CGGUGCGCGCGC-------------A--CGCG---------------GAGCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 3280 0.7 0.466758
Target:  5'- gGCCACGUGCaGCG-GCGUCgugUCGuAGCg -3'
miRNA:   3'- -CGGUGCGCG-CGCaCGCGG---AGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 3388 0.71 0.422273
Target:  5'- gGCgAgaaGCGCGCGUGCGCCaUCugguaguaGGAGCg -3'
miRNA:   3'- -CGgUg--CGCGCGCACGCGG-AG--------CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 4040 0.66 0.721247
Target:  5'- -aCGCGUGCaGCG-GCGUCUUGucGAGCg -3'
miRNA:   3'- cgGUGCGCG-CGCaCGCGGAGC--UUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.