miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 100686 0.73 0.312419
Target:  5'- cGCCGCGCGCGCGgccGaCGCgaCGcGGCg -3'
miRNA:   3'- -CGGUGCGCGCGCa--C-GCGgaGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 17125 0.75 0.242342
Target:  5'- uCCAUGCGCGCccGCGCCuugUCGAAGUUc -3'
miRNA:   3'- cGGUGCGCGCGcaCGCGG---AGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 2386 0.75 0.248131
Target:  5'- uCCACGUGCGCGccCGCCUCcagGAGGCa -3'
miRNA:   3'- cGGUGCGCGCGCacGCGGAG---CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 122373 0.74 0.266186
Target:  5'- cGCCACGCGCauguGCGUGCGCgaggUCGu-GCUg -3'
miRNA:   3'- -CGGUGCGCG----CGCACGCGg---AGCuuCGA- -5'
25902 3' -60.3 NC_005337.1 + 132093 0.73 0.305457
Target:  5'- cGCCGCcuGCGC-CGUGCGCgUCGgcGCc -3'
miRNA:   3'- -CGGUG--CGCGcGCACGCGgAGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 9951 0.73 0.305457
Target:  5'- cGCCGCGUccaugaGCGCcUGCGCCgcgaCGAGGCc -3'
miRNA:   3'- -CGGUGCG------CGCGcACGCGGa---GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 50389 0.73 0.311017
Target:  5'- cGCCugGCGCGgGggcGCGCCgcgcgucggugaCGGAGCg -3'
miRNA:   3'- -CGGugCGCGCgCa--CGCGGa-----------GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 6897 0.73 0.312419
Target:  5'- uGUCGCGCGCGCGcggguccGCGCCggcgCGcAGCa -3'
miRNA:   3'- -CGGUGCGCGCGCa------CGCGGa---GCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 109899 0.73 0.312419
Target:  5'- cGCCACGUGCGCGUGgaagaCGUgUCGcguGGGCa -3'
miRNA:   3'- -CGGUGCGCGCGCAC-----GCGgAGC---UUCGa -5'
25902 3' -60.3 NC_005337.1 + 65529 0.75 0.231102
Target:  5'- aCCugGUGCGCGUGCGCUcgaaaGAGGUg -3'
miRNA:   3'- cGGugCGCGCGCACGCGGag---CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 39936 0.75 0.225648
Target:  5'- -gUACGUGCGCGgcggGCGCCUCGcgcGGGCg -3'
miRNA:   3'- cgGUGCGCGCGCa---CGCGGAGC---UUCGa -5'
25902 3' -60.3 NC_005337.1 + 47610 0.75 0.220304
Target:  5'- cGCCGCGCGCGCGgccGCGCUga-AAGCc -3'
miRNA:   3'- -CGGUGCGCGCGCa--CGCGGagcUUCGa -5'
25902 3' -60.3 NC_005337.1 + 98882 0.83 0.070371
Target:  5'- cGCCGCGCGCGCGgacUGCGCgCUCG-AGCc -3'
miRNA:   3'- -CGGUGCGCGCGC---ACGCG-GAGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 126213 0.81 0.09139
Target:  5'- cGCCACGCGCGaGUGCGUgaUGGAGCUg -3'
miRNA:   3'- -CGGUGCGCGCgCACGCGgaGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 78151 0.77 0.168376
Target:  5'- cGCCGCGCaCGCuggcgaugccGUGCGCCUCG-AGCa -3'
miRNA:   3'- -CGGUGCGcGCG----------CACGCGGAGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 133460 0.77 0.181341
Target:  5'- cCCGCGCGCGCGgacgGCuCCgCGGAGCUg -3'
miRNA:   3'- cGGUGCGCGCGCa---CGcGGaGCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 109169 0.76 0.190469
Target:  5'- uCCGCGCGCGCc-GCGCCgcgcgggCGGAGCUc -3'
miRNA:   3'- cGGUGCGCGCGcaCGCGGa------GCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 126026 0.76 0.190469
Target:  5'- cCCGCGCGUGCGUGUGUCUCau-GCg -3'
miRNA:   3'- cGGUGCGCGCGCACGCGGAGcuuCGa -5'
25902 3' -60.3 NC_005337.1 + 109289 0.76 0.204917
Target:  5'- uCCAUGCGCGCGuUGCaGCCgaaGAAGCg -3'
miRNA:   3'- cGGUGCGCGCGC-ACG-CGGag-CUUCGa -5'
25902 3' -60.3 NC_005337.1 + 70256 0.75 0.220304
Target:  5'- cGCCACGCGCuGCGcgcUGUGCCg-GAAGCc -3'
miRNA:   3'- -CGGUGCGCG-CGC---ACGCGGagCUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.