miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 91784 1.13 0.001621
Target:  5'- cGCAGCUUCAGGAGCUCGCGCGUGAACg -3'
miRNA:   3'- -CGUCGAAGUCCUCGAGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 104277 0.74 0.473641
Target:  5'- cGCAGCa--AGGAGUUCGCGCGg--GCg -3'
miRNA:   3'- -CGUCGaagUCCUCGAGCGCGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 58616 0.74 0.512862
Target:  5'- cGCGGcCUUCGGGAuCUCGCaCGUGGAg -3'
miRNA:   3'- -CGUC-GAAGUCCUcGAGCGcGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 87801 0.72 0.605182
Target:  5'- cGCGGCUgcugccCGGGAGCUCGCgGCGcgccGCg -3'
miRNA:   3'- -CGUCGAa-----GUCCUCGAGCG-CGCacu-UG- -5'
25902 5' -54.9 NC_005337.1 + 42521 0.72 0.615641
Target:  5'- cCAGCUUCgAGGcGCacgCGCGCGUGGc- -3'
miRNA:   3'- cGUCGAAG-UCCuCGa--GCGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 25276 0.72 0.615641
Target:  5'- cGCGGCgcu-GGAGUUCGCGCGcacggcGGGCg -3'
miRNA:   3'- -CGUCGaaguCCUCGAGCGCGCa-----CUUG- -5'
25902 5' -54.9 NC_005337.1 + 77173 0.72 0.62297
Target:  5'- aCAGCUUCcGGAagaucagcgucgccGuCUCGCGCGUGAuccGCa -3'
miRNA:   3'- cGUCGAAGuCCU--------------C-GAGCGCGCACU---UG- -5'
25902 5' -54.9 NC_005337.1 + 35856 0.71 0.667962
Target:  5'- uGC-GCUgCGGGGGCggaCGCGCG-GAACu -3'
miRNA:   3'- -CGuCGAaGUCCUCGa--GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 12281 0.71 0.667962
Target:  5'- cGCAccccGCgcgCAGGAGCUCGCGCa----- -3'
miRNA:   3'- -CGU----CGaa-GUCCUCGAGCGCGcacuug -5'
25902 5' -54.9 NC_005337.1 + 58986 0.71 0.667962
Target:  5'- cGCAGCUguucCGGGuGCUCaaGCG-GAGCu -3'
miRNA:   3'- -CGUCGAa---GUCCuCGAGcgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 118177 0.71 0.68874
Target:  5'- cGCGGCggacccgUucGAGCUCGCGCcgGUGGGCg -3'
miRNA:   3'- -CGUCGaa-----GucCUCGAGCGCG--CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 46568 0.7 0.69906
Target:  5'- aGCGGCUcaucCAGGAGUUCGC-CGgccucgaccUGAACa -3'
miRNA:   3'- -CGUCGAa---GUCCUCGAGCGcGC---------ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 36613 0.7 0.719513
Target:  5'- cGCGGCcu--GGAGCgcgCGCGCGaccGAGCg -3'
miRNA:   3'- -CGUCGaaguCCUCGa--GCGCGCa--CUUG- -5'
25902 5' -54.9 NC_005337.1 + 61523 0.7 0.729627
Target:  5'- cCAGCUUCGuGAGCUCGuUGcCGUaGAGCa -3'
miRNA:   3'- cGUCGAAGUcCUCGAGC-GC-GCA-CUUG- -5'
25902 5' -54.9 NC_005337.1 + 56013 0.7 0.738654
Target:  5'- uGCAGCU-------CUCGCGCGUGAACg -3'
miRNA:   3'- -CGUCGAaguccucGAGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 110500 0.7 0.739652
Target:  5'- cCAGCUcgacguGGcGCUCGCGCGUGGu- -3'
miRNA:   3'- cGUCGAagu---CCuCGAGCGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 68236 0.7 0.739652
Target:  5'- cCGGgUUCcGGAGCgcggccgGCGCGUGGGCg -3'
miRNA:   3'- cGUCgAAGuCCUCGag-----CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 66106 0.7 0.739652
Target:  5'- uGCGGCgUCugcgcgcgcguGGAGUUCaaguccaaGCGCGUGGACg -3'
miRNA:   3'- -CGUCGaAGu----------CCUCGAG--------CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 32769 0.69 0.749579
Target:  5'- cCAGCcgCGcGGAgcGCUCGCGCaUGAGCg -3'
miRNA:   3'- cGUCGaaGU-CCU--CGAGCGCGcACUUG- -5'
25902 5' -54.9 NC_005337.1 + 35209 0.69 0.749579
Target:  5'- aGCAGC-UCGGGuacuGCgaCG-GCGUGAGCg -3'
miRNA:   3'- -CGUCGaAGUCCu---CGa-GCgCGCACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.