miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 673 0.67 0.887394
Target:  5'- uGCAGCagCAGcGGGCccuugCGCGCG-GAGg -3'
miRNA:   3'- -CGUCGaaGUC-CUCGa----GCGCGCaCUUg -5'
25902 5' -54.9 NC_005337.1 + 673 0.67 0.887394
Target:  5'- uGCAGCagCAGcGGGCccuugCGCGCG-GAGg -3'
miRNA:   3'- -CGUCGaaGUC-CUCGa----GCGCGCaCUUg -5'
25902 5' -54.9 NC_005337.1 + 809 0.66 0.907324
Target:  5'- cCAGCUcCGcGGAGCcguccgCGCGCGcGGGCc -3'
miRNA:   3'- cGUCGAaGU-CCUCGa-----GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 809 0.66 0.907324
Target:  5'- cCAGCUcCGcGGAGCcguccgCGCGCGcGGGCc -3'
miRNA:   3'- cGUCGAaGU-CCUCGa-----GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 1317 0.67 0.887394
Target:  5'- gGCGGCg-CAGGAGgUCcaGCGCGcugcaGAGCg -3'
miRNA:   3'- -CGUCGaaGUCCUCgAG--CGCGCa----CUUG- -5'
25902 5' -54.9 NC_005337.1 + 4677 0.68 0.824288
Target:  5'- -gAGCUcCAcGGucGCUCGCGCGgacuUGAGCa -3'
miRNA:   3'- cgUCGAaGU-CCu-CGAGCGCGC----ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 5007 0.67 0.880273
Target:  5'- aGCAGCgUCAGGucgAGCacgUCG-GCGuUGAGCa -3'
miRNA:   3'- -CGUCGaAGUCC---UCG---AGCgCGC-ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 8720 0.67 0.872173
Target:  5'- aGCAcGCUUCugcacacgcgcacGGGGGCUCG-GUG-GAACg -3'
miRNA:   3'- -CGU-CGAAG-------------UCCUCGAGCgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 9648 0.66 0.900923
Target:  5'- cGCGauGCUg-AGcAGCcCGCGCGUGAGCu -3'
miRNA:   3'- -CGU--CGAagUCcUCGaGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 10390 0.66 0.894278
Target:  5'- cGCAGCU---GGuGCUCGgGCuGUGGAg -3'
miRNA:   3'- -CGUCGAaguCCuCGAGCgCG-CACUUg -5'
25902 5' -54.9 NC_005337.1 + 10700 0.67 0.887394
Target:  5'- gGCGGC--CAGGAGCUCGgGCu----- -3'
miRNA:   3'- -CGUCGaaGUCCUCGAGCgCGcacuug -5'
25902 5' -54.9 NC_005337.1 + 12281 0.71 0.667962
Target:  5'- cGCAccccGCgcgCAGGAGCUCGCGCa----- -3'
miRNA:   3'- -CGU----CGaa-GUCCUCGAGCGCGcacuug -5'
25902 5' -54.9 NC_005337.1 + 14776 0.67 0.87292
Target:  5'- uGCuGCUUCccgugucugcuGGGcGCgguguuguucUCGUGCGUGAGCg -3'
miRNA:   3'- -CGuCGAAG-----------UCCuCG----------AGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 17606 0.67 0.87292
Target:  5'- -gAGCUggagCGGGAGCUgGaGCGgGAGCu -3'
miRNA:   3'- cgUCGAa---GUCCUCGAgCgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 22665 0.69 0.759399
Target:  5'- cGCGGCUgCGGGAGCgcuUCGCGgacaUGGACc -3'
miRNA:   3'- -CGUCGAaGUCCUCG---AGCGCgc--ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 25276 0.72 0.615641
Target:  5'- cGCGGCgcu-GGAGUUCGCGCGcacggcGGGCg -3'
miRNA:   3'- -CGUCGaaguCCUCGAGCGCGCa-----CUUG- -5'
25902 5' -54.9 NC_005337.1 + 25447 0.67 0.87292
Target:  5'- cGCGcGCUUCGGcaccGUggacgCGUGCGUGGACg -3'
miRNA:   3'- -CGU-CGAAGUCcu--CGa----GCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 26351 0.67 0.877359
Target:  5'- uCAGCgggcccuugaugCAGGuGCUCGCGCGgu-ACu -3'
miRNA:   3'- cGUCGaa----------GUCCuCGAGCGCGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 26401 0.66 0.913478
Target:  5'- uGCGGCagCAGGuacguGCUCGCgGCGgccGCg -3'
miRNA:   3'- -CGUCGaaGUCCu----CGAGCG-CGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 27247 0.67 0.880273
Target:  5'- aCAGCaUCuccGAGUUCGUgaGCGUGAACc -3'
miRNA:   3'- cGUCGaAGuc-CUCGAGCG--CGCACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.