miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 26351 0.67 0.877359
Target:  5'- uCAGCgggcccuugaugCAGGuGCUCGCGCGgu-ACu -3'
miRNA:   3'- cGUCGaa----------GUCCuCGAGCGCGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 81280 0.68 0.815496
Target:  5'- cGCcGCUaCAGGAGCaCGCGCcUGAu- -3'
miRNA:   3'- -CGuCGAaGUCCUCGaGCGCGcACUug -5'
25902 5' -54.9 NC_005337.1 + 27787 0.67 0.857544
Target:  5'- cGgAGUUgCGGGAGCaUCGCGCcuucagGAACa -3'
miRNA:   3'- -CgUCGAaGUCCUCG-AGCGCGca----CUUG- -5'
25902 5' -54.9 NC_005337.1 + 45376 0.67 0.865342
Target:  5'- -aGGaCUUCcuGGAGgaCgGCGCGUGGACg -3'
miRNA:   3'- cgUC-GAAGu-CCUCgaG-CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 69287 0.67 0.865342
Target:  5'- cGCGcGCgaCGGGcAGUUCGCGCGgGAGa -3'
miRNA:   3'- -CGU-CGaaGUCC-UCGAGCGCGCaCUUg -5'
25902 5' -54.9 NC_005337.1 + 118085 0.67 0.865342
Target:  5'- -gAGCUccUCGGG-GCUCuccgGCGCGUGGu- -3'
miRNA:   3'- cgUCGA--AGUCCuCGAG----CGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 64335 0.67 0.865342
Target:  5'- cGCcGCUUCGGGA--UC-CGCGUGAAg -3'
miRNA:   3'- -CGuCGAAGUCCUcgAGcGCGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 8720 0.67 0.872173
Target:  5'- aGCAcGCUUCugcacacgcgcacGGGGGCUCG-GUG-GAACg -3'
miRNA:   3'- -CGU-CGAAG-------------UCCUCGAGCgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 99586 0.67 0.87292
Target:  5'- uGCGgcGCUUCGGGcGGgaCuGCGCcGUGAGCa -3'
miRNA:   3'- -CGU--CGAAGUCC-UCgaG-CGCG-CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 56427 0.68 0.806529
Target:  5'- gGCAcCUaCGGGcAGCa-GCGCGUGGACg -3'
miRNA:   3'- -CGUcGAaGUCC-UCGagCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 38300 0.69 0.788108
Target:  5'- cCGGUgg-AGGGGCgCGCGCGUcGAGCg -3'
miRNA:   3'- cGUCGaagUCCUCGaGCGCGCA-CUUG- -5'
25902 5' -54.9 NC_005337.1 + 80256 0.69 0.778673
Target:  5'- cCAGCggCAGGAGCUCGauCuUGGGCu -3'
miRNA:   3'- cGUCGaaGUCCUCGAGCgcGcACUUG- -5'
25902 5' -54.9 NC_005337.1 + 118177 0.71 0.68874
Target:  5'- cGCGGCggacccgUucGAGCUCGCGCcgGUGGGCg -3'
miRNA:   3'- -CGUCGaa-----GucCUCGAGCGCG--CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 36613 0.7 0.719513
Target:  5'- cGCGGCcu--GGAGCgcgCGCGCGaccGAGCg -3'
miRNA:   3'- -CGUCGaaguCCUCGa--GCGCGCa--CUUG- -5'
25902 5' -54.9 NC_005337.1 + 66106 0.7 0.739652
Target:  5'- uGCGGCgUCugcgcgcgcguGGAGUUCaaguccaaGCGCGUGGACg -3'
miRNA:   3'- -CGUCGaAGu----------CCUCGAG--------CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 68236 0.7 0.739652
Target:  5'- cCGGgUUCcGGAGCgcggccgGCGCGUGGGCg -3'
miRNA:   3'- cGUCgAAGuCCUCGag-----CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 35209 0.69 0.749579
Target:  5'- aGCAGC-UCGGGuacuGCgaCG-GCGUGAGCg -3'
miRNA:   3'- -CGUCGaAGUCCu---CGa-GCgCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 22665 0.69 0.759399
Target:  5'- cGCGGCUgCGGGAGCgcuUCGCGgacaUGGACc -3'
miRNA:   3'- -CGUCGAaGUCCUCG---AGCGCgc--ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 94848 0.69 0.7691
Target:  5'- cGCGGCccgagCGGGcGCcCGCGCGUgucGAACa -3'
miRNA:   3'- -CGUCGaa---GUCCuCGaGCGCGCA---CUUG- -5'
25902 5' -54.9 NC_005337.1 + 131650 0.69 0.7691
Target:  5'- --cGCUUCgAGGAGCcCGUGCGcgccgcgcUGAACg -3'
miRNA:   3'- cguCGAAG-UCCUCGaGCGCGC--------ACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.